PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10022218

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 594aa MW: 66903.8 Da PI: 4.9729

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10022218	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.4e-06	445	488	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 h ++Er RR++ +++++ L ++lP++ +K +K +i++ A++ I + Lus10022218 445 HMMNERLRREEEKEGYSSLLSMLPSD-----TKKNKNAIVTGATRRIEE 488 7899*******************9.....8*********999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12823	2.40E-97	3	341	No hit	No description
Pfam	PF01544	1.7E-6	246	348	IPR002523	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB
Gene3D	G3DSA:1.20.58.340	4.9E-4	302	347	No hit	No description
SuperFamily	SSF144083	9.81E-6	305	349	No hit	No description
SuperFamily	SSF47459	8.87E-8	433	500	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.324	440	489	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-4	445	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030001	Biological Process	metal ion transport
GO:0055085	Biological Process	transmembrane transport
GO:0016020	Cellular Component	membrane
GO:0046873	Molecular Function	metal ion transmembrane transporter activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MSWILVDSTG QGTILDADKH AIMHRVQIHA RDLRILDPLL SYPSTILGRE RAIVLNLEYI 60 KAIITAEEVL LRDPSDEHVS PVVKELQRRL PLANDTQQEG QSNDKSQCTK QTDAEGGEED 120 ESPFEFRALE VALEAICIFL AERTTELETA AYPALDELTS KISSRNLDRV RKLKSAMTRL 180 TARVQKVRDE LEQLLDDDDD MADLYLSRKM AGSSSPVSAS GVDWFSASPT IGSKISRASR 240 ASVATVRDDD NDVEELEMLL EAYFMQIDGT LNKLTTLREY IDDTEDYINI QLDNHRNQLI 300 QLELFLSSGT VCLSIYSLVA GIFGMNIPYT WNAHYGYVFK WKQCLLFIAV KIKLRASLLF 360 QKVSMDDDFL VDELSLVVKG RTHPPNQSFA PYSNGGNRED YSSNNVAPAT NLNRRMMEFQ 420 KTNWEFNGKN VDSSSSSKQH LSFRHMMNER LRREEEKEGY SSLLSMLPSD TKKNKNAIVT 480 GATRRIEEIE GYKQMLERRI MDLQEAEEAQ SSTLDRRVAK KKVKIKVVST TSSGLEGSML 540 EVLYELKALG AEPTTIKSKI SRQGFEAVMD VETQSDAEKK IVSGIPGCFV LES*

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MSWILVDSTG QGTILDADKH AIMHRVQIHA RDLRILDPLL SYPSTILGRE RAIVLNLEYI  60
KAIITAEEVL LRDPSDEHVS PVVKELQRRL PLANDTQQEG QSNDKSQCTK QTDAEGGEED  120
ESPFEFRALE VALEAICIFL AERTTELETA AYPALDELTS KISSRNLDRV RKLKSAMTRL  180
TARVQKVRDE LEQLLDDDDD MADLYLSRKM AGSSSPVSAS GVDWFSASPT IGSKISRASR  240
ASVATVRDDD NDVEELEMLL EAYFMQIDGT LNKLTTLREY IDDTEDYINI QLDNHRNQLI  300
QLELFLSSGT VCLSIYSLVA GIFGMNIPYT WNAHYGYVFK WKQCLLFIAV KIKLRASLLF  360
QKVSMDDDFL VDELSLVVKG RTHPPNQSFA PYSNGGNRED YSSNNVAPAT NLNRRMMEFQ  420
KTNWEFNGKN VDSSSSSKQH LSFRHMMNER LRREEEKEGY SSLLSMLPSD TKKNKNAIVT  480
GATRRIEEIE GYKQMLERRI MDLQEAEEAQ SSTLDRRVAK KKVKIKVVST TSSGLEGSML  540
EVLYELKALG AEPTTIKSKI SRQGFEAVMD VETQSDAEKK IVSGIPGCFV LES*

Functional Description ? help Back to Top
Source	Description
UniProt	Low-affinity magnesium transporter that mediates the influx of magnesium. {ECO:0000269\|PubMed:19093971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10022218

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023006732.1	0.0	magnesium transporter MRS2-I-like isoform X1
Swissprot	Q304A0	1e-179	MRS27_ARATH; Magnesium transporter MRS2-7
TrEMBL	A0A2P2JN52	0.0	A0A2P2JN52_RHIMU; Magnesium transporter CorA-like family protein
TrEMBL	A0A2P2JN62	0.0	A0A2P2JN62_RHIMU; Magnesium transporter CorA-like family protein
STRING	Lus10022218	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10022218

Publications ? help Back to Top
Li L,Tutone AF,Drummond RS,Gardner RC,Luan S A novel family of magnesium transport genes in Arabidopsis. Plant Cell, 2001. 13(12): p. 2761-75 [PMID:11752386] Mao DD, et al. AtMGT7: An Arabidopsis gene encoding a low-affinity magnesium transporter. J Integr Plant Biol, 2008. 50(12): p. 1530-8 [PMID:19093971] Gebert M, et al. A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments. Plant Cell, 2009. 21(12): p. 4018-30 [PMID:19966073] Kamiya T,Yamagami M,Hirai MY,Fujiwara T Establishment of an in planta magnesium monitoring system using CAX3 promoter-luciferase in Arabidopsis. J. Exp. Bot., 2012. 63(1): p. 355-63 [PMID:21914662] Schmitz J,Tierbach A,Lenz H,Meschenmoser K,Knoop V Membrane protein interactions between different Arabidopsis thaliana MRS2-type magnesium transporters are highly permissive. Biochim. Biophys. Acta, 2013. 1828(9): p. 2032-40 [PMID:23732234] Oda K, et al. The Arabidopsis Mg Transporter, MRS2-4, is Essential for Mg Homeostasis Under Both Low and High Mg Conditions. Plant Cell Physiol., 2016. 57(4): p. 754-63 [PMID:26748081] Alcock TD, et al. Identification of Candidate Genes for Calcium and Magnesium Accumulation in Brassica napus L. by Association Genetics. Front Plant Sci, 2017. 8: p. 1968 [PMID:29187860]