PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 117aa MW: 12931.9 Da PI: 10.1425 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.4 | 7.9e-12 | 10 | 55 | 2 | 47 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdL 47 p+G+rF+P++eelv++yLk k++g++l+ + i+++d+y + Pw++ Lus10022018 10 PVGIRFNPKEEELVNYYLKGKAKGEPLPS-NLIHKIDLYGAkTPWEI 55 89**************************9.89*******8757*998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-19 | 4 | 115 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.323 | 9 | 116 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-13 | 10 | 114 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MESTKGYTYP VGIRFNPKEE ELVNYYLKGK AKGEPLPSNL IHKIDLYGAK TPWEIFPGNK 60 RIKDARERQI GIKKTFSFKV TSEKAKVKGK SCASSSSTAV AEGSSGWIMH EYSLLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022018 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525963.1 | 2e-21 | NAC domain-containing protein 53 | ||||
TrEMBL | B9SIZ0 | 1e-20 | B9SIZ0_RICCO; Uncharacterized protein | ||||
STRING | Lus10022018 | 4e-80 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27317 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 5e-10 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Lus10022018 |