PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021992 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 397aa MW: 44703.2 Da PI: 8.8469 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.3e-52 | 13 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtd+el+ +yL+kk+++++++l ++i++v+iyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++ Lus10021992 13 LPPGFRFHPTDQELILHYLHKKLSSSPFSL-SIIADVNIYKFDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAARSGYWKATGTDKVISVAlpv 109 79***************************9.89***************988899**************************************999999 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g+kk Lvfykgr pkg ktdW+mheyrl Lus10021992 110 ghagkDNIVIGVKKALVFYKGRPPKGIKTDWIMHEYRL 147 988766677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-62 | 7 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 13 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-27 | 14 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MVMIQQQSPQ SSLPPGFRFH PTDQELILHY LHKKLSSSPF SLSIIADVNI YKFDPWDLPA 60 KATFGEKEWY FFSPRDRKYP NGARPNRAAR SGYWKATGTD KVISVALPVG HAGKDNIVIG 120 VKKALVFYKG RPPKGIKTDW IMHEYRLSDP PSYIANPNNK PIRPKDFSSM RLDDWVLCRI 180 YKKSHPNSSH HQHHHLHPVQ SVTTAASVSS TTSAGPDQED EEDHQQLYLV SQPSSKTPTT 240 ITNQTALLPQ KSSSFSNLFD ATDYSLLSNF LSDPEFIVNP PPPLIEATDS IVTATTTTMN 300 QQQSSNLSYL HHKVLPDHRS MEMMTSTRPM RDRSNGEKDV TWMGTHSKKS MTCSFINNDI 360 NASGSQDYYD DQYGGFVNQG ALNHKLLMSH HLQFQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-71 | 4 | 183 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-71 | 4 | 183 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-71 | 4 | 183 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-71 | 4 | 183 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-71 | 4 | 183 | 9 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-71 | 4 | 183 | 6 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-71 | 4 | 183 | 6 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021992 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219285.1 | 1e-118 | NAC transcription factor 47 | ||||
TrEMBL | A0A151T9N7 | 1e-117 | A0A151T9N7_CAJCA; NAC domain-containing protein 29 | ||||
STRING | Lus10021992 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 5e-89 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Lus10021992 |