PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021656
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 489aa    MW: 53228.1 Da    PI: 8.3016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021656genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07164184526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C  +   G C++Gd+C+F H+
  Lus10021656 164 ICGEWKS-GNCPRGDKCQFLHS 184
                  6777777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.5351945IPR000571Zinc finger, CCCH-type
SMARTSM003560.0382044IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544159186IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6160185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5160184IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-6162184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-7164182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.9E-10183303IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.37190230IPR001680WD40 repeat
SuperFamilySSF509782.08E-35192484IPR017986WD40-repeat-containing domain
SMARTSM00320440270307IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.5E-26304486IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0012316353IPR001680WD40 repeat
PfamPF004000.0069319353IPR001680WD40 repeat
PROSITE profilePS5029417.376323402IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.277323362IPR001680WD40 repeat
PROSITE patternPS006780340354IPR019775WD40 repeat, conserved site
SMARTSM003203.1E-6356393IPR001680WD40 repeat
PfamPF004004.5E-5358392IPR001680WD40 repeat
PROSITE profilePS500829.539363392IPR001680WD40 repeat
SMARTSM00320130397431IPR001680WD40 repeat
PROSITE patternPS006780418432IPR019775WD40 repeat, conserved site
SMARTSM00320140442479IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVFKSNVFDR LGVSRHDQKN SRVICRFWKL GKCTHQPCRF VHGESPSAAP SPSPYRRSNV  60
YNRGSQYSSQ QPRSNVYIRQ SRSKPPPSTP VDSCRRDSPK RATLQKPNNV SDGKIILTTE  120
DDQKKSEETN SPKHATLQKS NNVSDEKIIL IADDDQKKSK EETICGEWKS GNCPRGDKCQ  180
FLHSWSRGDG FSMLGRLPGH GSSAVSGLSL SSAISRLYCG SIDGILQAWD CTSGEVVGSM  240
NVGGKIKCMV TDGDWLYVGL QNMGKAWNVH SGAQHILEGP VGQVHALHIG ISNVFAAAED  300
GVIWGWKTSA DQKGNLFQPA LSLIGHTSAV ISLRSGAGRL FSGSIDGTIK VWDGSTFQCT  360
QTLKGHDDAV TSLLCYSEYL LSCSLDKKIK VWGSNKEGRL EVVYTHEEAV GALALCGIGA  420
CGKDMLLCSW NNDSVGMYEL PSFAEKGRMY SKCEVRSFGV GTGGMFFTGD ASGVVTVWNL  480
AEEEKMER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B3e-16184442102391F-box/WD repeat protein 7
2ovq_B3e-16184442102391F-box/WD repeat protein 7
2ovr_B3e-16184442102391F-box/WD repeat protein 7
5v4b_B4e-16184442102391F-box/WD repeat-containing protein 7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100216560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.19e-81zinc finger WD40 repeat protein 1