PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021648
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 465aa    MW: 50530 Da    PI: 7.2531
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021648genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-06132152526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C  +   G C +Gd+C+F H+
  Lus10021648 132 ICGEWKS-GNCLRGDKCQFLHS 152
                  5777766.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5491945IPR000571Zinc finger, CCCH-type
SMARTSM003560.442044IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371127154IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5127153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5129152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5132147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.6E-34148452IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.1158198IPR001680WD40 repeat
SuperFamilySSF509781.83E-36160455IPR017986WD40-repeat-containing domain
SMARTSM0032014238277IPR001680WD40 repeat
PROSITE profilePS5029419.486245373IPR017986WD40-repeat-containing domain
SMARTSM003206.3E-5286324IPR001680WD40 repeat
PfamPF004000.0019288324IPR001680WD40 repeat
PROSITE profilePS5008211.879293333IPR001680WD40 repeat
PROSITE patternPS006780311325IPR019775WD40 repeat, conserved site
SMARTSM003206.4E-7327364IPR001680WD40 repeat
PfamPF004003.8E-5329363IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVLKSNVFDR LGVSGHDQKN SRTVCRFWKV GKCTHQPCRY FHGESPSAAP SPSPYRRSNV  60
NNRGGSQYSS QQPRSNVYIR PSPSKPPPST PVDSRQRDSP KQATLQKPNN VSDEKIILIA  120
EDDQKKSEEE TICGEWKSGN CLRGDKCQFL HSWSRGDGFS MLGRLQGHGS SAVSGLSLAS  180
EVSKLFCGTS DGVLQSWNSV TGDVVGSLNV GGKIGCMITE GDWLYVGLQS MVQAWNIHSG  240
AQHILAGPVG QVHALTVDYE MTIVFAAAED GIIWAWKTNT DEHGNIFQPT ASLIGHTSAV  300
ISLRSGAGSR VYSGSIDGTI KVWDGRTSQC IQTLKGHDDA VTCLLCYRCY LLSCSLDKKI  360
KVWGHNKERR LEVEYTHEEA DGGLALCGIE ECGKEMLLCS WNNDSVGLYE LPSFVEKGRM  420
YMKCEVRSLG GGTGGMFFTG DASGVVTVWK LAEEAKNGAV EVVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-14152461102432F-box/WD repeat protein 7
2ovq_B7e-14152461102432F-box/WD repeat protein 7
2ovr_B7e-14152461102432F-box/WD repeat protein 7
5v4b_B7e-14152461102432F-box/WD repeat-containing protein 7
6g6m_A3e-141623808320Tako8
6g6n_A3e-141623808320Tako8
6g6n_B3e-141623808320Tako8
6g6n_C3e-141623808320Tako8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100216480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-84zinc finger WD40 repeat protein 1