PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021470
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 857aa    MW: 93296.8 Da    PI: 5.9104
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021470genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-183088357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lus10021470 30 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 88
                 5679*****************************************************97 PP
2bZIP_119.81.7e-06821271863
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l  e+
  Lus10021470  82 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVVEN 127
                  9****************************************98776 PP
3START158.93.9e-501703772204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++ g a+ra+g+v  +++   +e+l+d++ W ++ ++ e+      g  g+++l +++
  Lus10021470 170 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPT-KIAEILKDRPSWFRDSRSLEVFTLFPAGngGTIELVYSQ 266
                  789*******************************************************.7777777777*******9888888887777********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+++l+ g++v++++S++     p+   s+++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Lus10021470 267 TYAPTTLAPaRDFWTLRYTKTLENGSLVVCERSLSGSGAGPSqatSAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 364
                  ***********************************8888887799***************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Lus10021470 365 AQKITIAALRYIR 377
                  ********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-18988IPR009057Homeodomain-like
PROSITE profilePS5007115.3372589IPR001356Homeobox domain
SMARTSM003895.0E-152793IPR001356Homeobox domain
SuperFamilySSF466893.59E-162992IPR009057Homeodomain-like
CDDcd000864.92E-163090No hitNo description
PfamPF000467.1E-163188IPR001356Homeobox domain
CDDcd146861.82E-682121No hitNo description
PROSITE profilePS5084827.348160388IPR002913START domain
CDDcd088751.03E-69164380No hitNo description
SMARTSM002343.3E-41169379IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-19169352IPR023393START-like domain
SuperFamilySSF559613.98E-33169381No hitNo description
PfamPF018521.4E-47170377IPR002913START domain
PfamPF086705.7E-44708855IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MAMAVAHHRE TSSGGGGGGS ITKHLADNGK YVRYTAEQVE ALERVYAECP KPSSLRRQQL  60
IRECPILCNI EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV  120
SQLVVENGYM RQQLQTLNAS GGTDGSCDSV VTTPQHSLRD ANNPAGLLSI AEETLTEFLS  180
KATGTAVDWV QMPGMKPGPD SVGIFAISQS CGGVAARACG LVSLEPTKIA EILKDRPSWF  240
RDSRSLEVFT LFPAGNGGTI ELVYSQTYAP TTLAPARDFW TLRYTKTLEN GSLVVCERSL  300
SGSGAGPSQA TSAQFVRAEM LPSGYLIRPC DGGGSIIHIV DHLNLEAWSV PEVLRPLYES  360
SKVVAQKITI AALRYIRQIA QEMSGEVVYS LGRQPAVLLT FSQRLSRGFN DAVNGFNDDG  420
WSMMTTCDGA EDVIISVNST KNLTSTLNNT AGNSFSFLGG ILCAKASMLL QNVPPAVLVR  480
FLREHRSEWA DFNVDAYSAA SLKPGSYAYP GIRPTRFTGS QIIMPLGHTI ENEEMLEVIR  540
LEGHSLVQED AFVSRDIHLL QICSGIDENA VGACSELVFA PIDEMFPDDA PLLPSGFRVI  600
PLDSKAKDTQ DALNTNRTLD LTSSLEVGTA TNPSAPDSTS GQNSRSVLTI AFQFPFESNL  660
QENVATMARQ YVRSVISSVQ RVAMAISPSG LSPSVGRNLS PGSPEALTLA QWINQSYRQV  720
YYIGAELLSS DDSSTGDSLL KSLWHHPDAI LCCSLKSLPV FIFANQAGLD MLETTLVALQ  780
DITLDKIFDE SGRKALYADF AKLTDQGFAY LAGGICMSTM GRHVSFAQAV SWKVHAAGDE  840
NTVHCLAFSF VNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021470
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529946.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLB9SVC70.0B9SVC7_RICCO; DNA binding protein, putative
STRINGLus100214700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]