PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020889
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 916aa    MW: 101576 Da    PI: 9.4568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020889genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-06144164425
                  ---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                  elC+ f + G C++G+ C+F H
  Lus10020889 144 ELCKQFVA-GRCRRGSHCHFLH 164
                  89**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.08140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5142165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5144165IPR000571Zinc finger, CCCH-type
SMARTSM003560.013221247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.84226248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4226249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MSSSAGRKRS SKWDLGDESR NSFENQQNNG KAGLSYHETD DGNRSRWSTM DRRGSLGDHR  60
MIDDEYGRTS GWERDEDYGP RMSPGLEEWR HRSRRHSPSK EWKRPRRSRT RSQSRSRSRS  120
PGHSLRRDSS TSDRIRNRSG VSAELCKQFV AGRCRRGSHC HFLHESAPSY EDNWDGRGKS  180
LPSRYSDVPA KGPTNDFVRE RDIDRRHRDP SPDRPNEPIR RAIETPCRYF AAGNCRNATS  240
CRFSHQAQDD NTSPERRPRN ERRLMDQNMD NRDKMWDGPK WRDVDNYSEA SKSTRDVEKQ  300
WNGDKYSNLN NNSDSAKLID DRSRKTGWSV DNSRVQSLAG RTTLKQHQSP TNLGLNALPH  360
LPTMNSVEQS RVGNAHEHDR LRGVTGTSPM SPKPLNIGQG TGDRSNIAVN SSTPFAQNIV  420
SGEQLATLTP FTQNIVSGEQ LATLTPFTQN IVSGEQLATL TPFTQNIVSG EQLATLTPFT  480
QNIVSGEQLA TLTPFTQNIV SGEQLATLTP FTQNIVSGEQ LATLTPFTQN IVSGEQLATL  540
TPFTQNIVSG EQLATLTPFT QNIVSGEQLA TLTPFTQNIV SGEQLATLTP FTQNIVSGEQ  600
LATLTPFTQN IVSGEQLATL TNLSVSLAQL LANGHQLPQL YAAHSSNPAS DHVKQYDPIC  660
DSIEPGNQGV GNKLSDQKEK STGDHGEAPM AAPNGSNDKS GKSNELKPGA ESGIIEDNSG  720
KKAKDSGKVK ESKAGEENID ADDEEDKKSK EAKGSRAFKF ALVEFVKEAL KPAWKEGQVS  780
KDSYKNIVKK VVDKVTGSVQ VANIPQTQEK IEQYVSVSKP KMNKLVQAYV EKFQKDLRLD  840
EQKCAVLWLQ GCNSGVPLAA SSLQSHRNVL KDLHAANHSR NPPPAMSSTL KHSTKYRKTT  900
DRPQTDRGNQ NKQFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020889
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100208890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-16C3H family protein