PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GATA | ||||||||
Protein Properties | Length: 198aa MW: 21024.1 Da PI: 10.7511 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.9 | 5.1e-17 | 30 | 64 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+t+ TplWR gp g+k+LCnaCG+++rk+++ Lus10020684 30 CIDCKTSRTPLWRTGPAGPKSLCNACGIRHRKRRR 64 889*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-12 | 24 | 76 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.32E-12 | 25 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.7E-15 | 28 | 64 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 30 | 55 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.215 | 30 | 60 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.20E-11 | 30 | 64 | No hit | No description |
Pfam | PF00320 | 7.9E-15 | 30 | 64 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDLGDSVIVS NPEVKPLSVG NEDHDGKKLC IDCKTSRTPL WRTGPAGPKS LCNACGIRHR 60 KRRRAAMALE TAASDQKLSK KHQSISPAAD STSSSESTTT STDTAKSSAV AAASGTTSPP 120 SAGQVRVRVV YSGKDRSTTM IQKKKKKSSS LPRLPAPIPS TPLVVVKKQR CQRRRKLAEE 180 EQAAFCLMAL SCASIFA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 63 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020684 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10020684 | 1e-140 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16141.1 | 2e-19 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10020684 |