PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020643 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 27831 Da PI: 5.3978 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.3 | 1.6e-45 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Pt+eelv++yL+k++eg+ e ++vi+ +diy+++Pw+Lp+ ++++++++w++F++r++++a+g r+nr+t sgyWkatg+ v+s Lus10020643 6 PPGFRFFPTEEELVSFYLHKQLEGTIQEGlHQVIPVIDIYEIDPWHLPSvageRCRGDTEQWFYFTPRQEREARGGRPNRTTGSGYWKATGSPSYVYS 103 9***********************986651566***************546666666888************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g+kkt+vfykg+ap g+kt+W m+eyr+ Lus10020643 104 SNNRVIGMKKTMVFYKGKAPAGRKTKWKMNEYRA 137 ********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-49 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.376 | 5 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-23 | 6 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAGQFPPGFR FFPTEEELVS FYLHKQLEGT IQEGLHQVIP VIDIYEIDPW HLPSVAGERC 60 RGDTEQWFYF TPRQEREARG GRPNRTTGSG YWKATGSPSY VYSSNNRVIG MKKTMVFYKG 120 KAPAGRKTKW KMNEYRAIDG GLSESSSPPI PQLRREFSLC RIYVVSGTFG AFDRRPLEAA 180 TSTSIGAQVP SDVPSSSAQV PAAVVERTNS SETSNSGGDH GFSQGAGIAD MEIADCLDEQ 240 FIDWEQLDWP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-37 | 5 | 163 | 20 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020643 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629180.1 | 1e-113 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-95 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2C9V1V9 | 1e-111 | A0A2C9V1V9_MANES; Uncharacterized protein | ||||
STRING | Lus10020643 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-98 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Lus10020643 |
Publications ? help Back to Top | |||
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