PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 145aa MW: 16677.5 Da PI: 10.431 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++ + rqvtfskRr+g++KKA+ELS+LCda+va+i+fs+t+klye+ss Lus10020477 10 RIDDRTSRQVTFSKRRTGLIKKAKELSILCDAQVALIVFSTTNKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 57.4 | 6.2e-20 | 84 | 142 | 12 | 70 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 + + +q+e+akL ke+++L + +R+l+Ge+L+ L +++Lq+Le+qLe slk iR K Lus10020477 84 LEIKFWQKEAAKLGKELQSLHEYHRQLMGEELSCLGVRDLQNLETQLEISLKAIRLNKV 142 56799**************************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.244 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.38E-41 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.6E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.626 | 86 | 144 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-16 | 86 | 142 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MGRGKIVIRR IDDRTSRQVT FSKRRTGLIK KAKELSILCD AQVALIVFST TNKLYEFSST 60 SMMSVIDRYT RQKEAHIQPC NPALEIKFWQ KEAAKLGKEL QSLHEYHRQL MGEELSCLGV 120 RDLQNLETQL EISLKAIRLN KVRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-25 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 9e-25 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 9e-25 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 9e-25 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020477 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021659610.1 | 5e-71 | MADS-box transcription factor ANR1-like isoform X4 | ||||
Swissprot | Q6Z6W2 | 5e-63 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
Swissprot | Q9SZJ6 | 4e-63 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A2L0V298 | 2e-67 | A0A2L0V298_HEVBR; MADS-box protein (Fragment) | ||||
STRING | Lus10020477 | 1e-102 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-65 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Lus10020477 |