PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020196
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 434aa    MW: 47024.9 Da    PI: 8.0115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020196genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-114672127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Lus10020196 46 PGEPDCSYYIRTGLCRFGATCRFNHPP 72
                 5789*********************97 PP
2zf-CCCH39.11.3e-1293117327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+ff++tGtCk+G++CkF+H++
  Lus10020196  93 QPECQFFLKTGTCKFGATCKFHHPK 117
                  799********************96 PP
3zf-CCCH38.22.3e-12139163327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Lus10020196 139 EVECAYYLRTGQCKFGSTCKFHHPQ 163
                  689********************97 PP
4zf-CCCH33.57e-11294320127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++ +tG Ck+G+ C+F+H++
  Lus10020196 294 PGQPECQYYIKTGDCKFGAVCRFHHPR 320
                  5789*********************96 PP
5zf-CCCH40.25.8e-13340366127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  Lus10020196 340 PGEPLCIFYSRYGICKFGPSCKFDHPM 366
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5874573IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-54572IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-84772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-45171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33890118IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-690117IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-496116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356136164IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6139164IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155293321IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4293320IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5297321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4299321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709339367IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7339366IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10341366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5342366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4344364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MEFDASGIPM SREGTSLTPS LNEGSMWQVN LRSSEAMEPG VYPERPGEPD CSYYIRTGLC  60
RFGATCRFNH PPNRKLAIAA ARMKGEFPER IGQPECQFFL KTGTCKFGAT CKFHHPKDKA  120
GMAGRVSLNS LGFPHRPNEV ECAYYLRTGQ CKFGSTCKFH HPQPSNLMLP LRGSPIYPTV  180
QSPTTPAQQS YPGGLTNWSR VSYITSPRWQ GPSSYTPLIL PQGVVSVPGW NAYSGQVGSV  240
SSPDSQQQSG VYGSSHQNES SSAEASGAFS PYRSGSVSVG YYALQGDNVF PERPGQPECQ  300
YYIKTGDCKF GAVCRFHHPR ERSIPAPDCV LSPIGLPLRP GEPLCIFYSR YGICKFGPSC  360
KFDHPMGIFT YNMSGSTSAD APVQRLLGSS SGPASLALTS EGLVEASSAM PRRLSLSEPR  420
QMPSGDDDID TEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620512.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A251KCB90.0A0A251KCB9_MANES; Uncharacterized protein
STRINGLus100201960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-180zinc finger protein 1