PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020118
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 650aa    MW: 73748.6 Da    PI: 7.6151
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020118genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-09592636345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
      Lus10020118 592 VWSAVQERALVQALKTFPKDanqRWERVAAAVP-GKTVNQCKKKFA 636
                      6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.36E-2089172IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.1E-2191194IPR001623DnaJ domain
SMARTSM002714.9E-1593168IPR001623DnaJ domain
CDDcd062575.10E-1394165IPR001623DnaJ domain
PfamPF002261.5E-1794173IPR001623DnaJ domain
PROSITE profilePS5007618.63894176IPR001623DnaJ domain
PRINTSPR006253.0E-899117IPR001623DnaJ domain
PRINTSPR006253.0E-8117132IPR001623DnaJ domain
PRINTSPR006253.0E-8148168IPR001623DnaJ domain
PROSITE patternPS006360153172IPR018253DnaJ domain, conserved site
SuperFamilySSF466893.12E-6452501IPR009057Homeodomain-like
PROSITE profilePS500905.355452495IPR017877Myb-like domain
SMARTSM007171.9E-4456509IPR001005SANT/Myb domain
CDDcd001670.00351459501No hitNo description
PROSITE profilePS5129310.038588643IPR017884SANT domain
SMARTSM007175.6E-9589641IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-5590635IPR009057Homeodomain-like
SuperFamilySSF466893.9E-9591646IPR009057Homeodomain-like
PfamPF002491.3E-7592635IPR001005SANT/Myb domain
CDDcd001678.24E-7593639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MMVRNSLRLI SYSQELVDGQ PVFVSSNCFP AKAKNYDPAG HAFHAAALKL VGHEEAVDSK  60
EDSVSKDKEQ THMPSAESYS SKGKKKGTGE NQQDHYALLG LSHLRYLATE EQIRKSYREV  120
ALKYHPDKQA ALLLAEETEA AKQAKKEQIE SHFKAIQEAY EALIDPVKRR VYDSTDEFDD  180
EVPTDCAPQD FFKVFGPAFV RNGRWSVSQP VPPLGDDATP FKEVDSFYDF WYSFKSWREF  240
PHEDEFDLED AESRDHKRWM ERQNAKLSEK ARKEDYARIR TLVDNAYRRD PRIQKRKEEE  300
KAEKQRKKEA KYLAKKLQEE EAAKAAEEEI RRKEEEGKRA AEAASLQKKA KEKEKKLLRK  360
ERARLRTLSA PVLSDRFLGL TEDDVENLCM SLDTEQMRSL CEKMEGQESL EKANLLKNAC  420
GHEQEAENHK GDQKKMAQQN GPVSNGGFPG SSYRSKEKPW LREEIELLRK GMLKFPKGTS  480
RRWEVISDYI GTGRSVEEII KATKTVLLQK PDSAKAFDSF LEKRKPAVSI ASPLTTREEV  540
ELVNPQSSED NAAKVDNTEE APSLSSDNSK TDDGNSAANT TPSSSSSSEQ DVWSAVQERA  600
LVQALKTFPK DANQRWERVA AAVPGKTVNQ CKKKFALLKD SFRSKKSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1919029420124Zuotin
5dje_B3e-1919029420124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299170.20.0dnaJ homolog subfamily C member 2
RefseqXP_024442936.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2K2BRW20.0A0A2K2BRW2_POPTR; Uncharacterized protein
STRINGLus100201180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-126DnaJ domain ;Myb-like DNA-binding domain