PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019871
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 458aa    MW: 50809.7 Da    PI: 5.8447
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019871genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.61.9e-17114203299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +k ++ps+v     l++ k+f+++h+  +  ++++ lede+g++W+ k+    ++++  l++GW++F + ++L egD++vF+l+++ +f  +v ++r+
  Lus10019871 114 VKMMLPSHVQGGFSLSMAKDFCNDHM--PMMDRMVELEDENGQVWSAKY--LAGKQG--LSGGWRGFSNHHKLAEGDVLVFELVKSIKF--KVYIVRN 203
                  68899*****************9995..345679***************..777777..9**********************9986555..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-21107204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-22108207IPR015300DNA-binding pseudobarrel domain
CDDcd100177.78E-21111202No hitNo description
PROSITE profilePS5086314.043113204IPR003340B3 DNA binding domain
SMARTSM010194.4E-17113204IPR003340B3 DNA binding domain
PfamPF023625.8E-15114203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MQSSIWVPVL LSSTAMTIPQ AHHIQKRKRG RPRKLKKQNP KHQPRTTWLQ VPKVTVGDGE  60
EGGSNVAAAR SKQCYKRRRF STGDLYDNVE AMNVVMNKAE EIKATLPNDH PVLVKMMLPS  120
HVQGGFSLSM AKDFCNDHMP MMDRMVELED ENGQVWSAKY LAGKQGLSGG WRGFSNHHKL  180
AEGDVLVFEL VKSIKFKVYI VRNNAFEKLD DVELRNPDSD ALEPPEDADK QCSPEIEGRD  240
FELLQPLGPE VGKDGGNVES KSSEKVTSGE IKVPKPAPDF GQVKSFVDFN IVTSNGSTIN  300
SELPDHVEFG YYALCSSQNS YLHQSILKDV NSKLISGMIV ETVDIANAMM NSEVGTVQGE  360
DFATWGSKLD AFEKLGMEVG FLQVRLRELV RIFDKADEYK KLSAERGHVV EKVADLEAQL  420
GEARGGLEKL DWEIGRLGFD GKGVELAFVE LANAPWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100198710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-30B3 family protein