PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019870
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 365aa    MW: 41056.5 Da    PI: 5.5838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019870genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-17129218198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v+   +l lp+ f+++h  k   +  +tl de+ ++ e k+  +k++    l++GW++F+ +++L +gD +vF+l++  ef  +v+++r
  Lus10019870 129 FVKPMLQSHVTGGFWLGLPRGFCNTHLPK--HDELITLIDEDEQQSETKYLADKNG----LSGGWRGFAIDHELVDGDALVFQLISPAEF--KVHIIR 218
                  89*********************999433..3448***************777777....***********************9986666..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-20122219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-24123220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-25127218No hitNo description
PfamPF023621.9E-14129219IPR003340B3 DNA binding domain
SMARTSM010195.5E-22129220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVESKKKLMS YEETRLQRLE ENRKRMEDLN LLKLADHLRP KSKSSPVKQA KPRAPKPVLG  60
PARRSSRIAD KPSVSYKEGM VEPLEGLRAR RTARYTRSDR VYASSAARSY AVERAEELES  120
ILEKEYPCFV KPMLQSHVTG GFWLGLPRGF CNTHLPKHDE LITLIDEDEQ QSETKYLADK  180
NGLSGGWRGF AIDHELVDGD ALVFQLISPA EFKVHIIRVN NVEGGDDSEK DTQEEEEEDD  240
DADKENQEGE EVDSEKENQK EEQDDSDDGT KRRSKRLRAG NCLSGCSLVL ENSHCFNKTV  300
KCLGSLALLW LSKLISLQLK EVGFPFGAEM GKFFAVVAMD ALGFRLCSEK ALLPCFVGIS  360
QISR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8849448e-44HQ884944.1 Linum usitatissimum clone Contig773 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539590.13e-96PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M31e-81Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A1U8E8F37e-95A0A1U8E8F3_CAPAN; B3 domain-containing protein
TrEMBLA0A2G2Y0507e-95A0A2G2Y050_CAPAN; B3 domain-containing protein At3g19184-like
STRINGLus100198700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-68B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]