PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019709
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 788aa    MW: 86038 Da    PI: 6.2979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019709genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07375395526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  Lus10019709 375 PCPDFRK-GACRRGDMCEYAHG 395
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.68E-16102222IPR020683Ankyrin repeat-containing domain
SMARTSM002480.018141171IPR002110Ankyrin repeat
CDDcd002041.77E-14141219No hitNo description
PROSITE profilePS5029718.802141248IPR020683Ankyrin repeat-containing domain
PfamPF127965.8E-9141210IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.8E-17142221IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.648176211IPR002110Ankyrin repeat
SMARTSM002480.0069176208IPR002110Ankyrin repeat
SMARTSM003564.0E-6370396IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-5375395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582375397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4375397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4403433IPR000571Zinc finger, CCCH-type
SMARTSM0035642405428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MKRDWLQQQE FDNSRFYVVS LIEKNGNYLI LADLLTHTTS SPFRSLLLFS TSGFQLLKYV  60
PEGSSNAEST ESPSTTKAIS DTKDMKHLTV ETDDCFSSLL ELAANDDIEG FRTSVERDAS  120
SIDEVGFWYS RQKGAKQIVL EHRTPLMVAA IYGSVDVLEL ILTKTQADVN FSCGTDKTTA  180
LHCAASGGSA SAVDVVKMLL LAGADPNLVD ANGHRPVDVI VVPPKLQSLR FILEGLLSDG  240
GSFEGAGTEH FLNGNIGGER NNLRVSVMTS SSSSPTHSSS PGNGSPPSPS VLVYSPMASK  300
FSDQPLAEKK EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN  360
ARRRDPRKFH YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCNRR  420
VCFFAHLPEE LRPLYVSTGS AVPSPRSSAA SVMDMAAALS MLPGSPSSMS GMSSPTPFNQ  480
QPMSNSINGG GWPQPNVPTL HLPGSNLQSS RLRSSLSARD IPPHDFDFLK DFDAQQHILN  540
DLTCFSQSRN NNSASLNRSG RPTSLTPSNL EELFSAELSS PRYADQGAAA FSPTHKSAML  600
HQFQQQQQSM LSPINTSVFS PKNVDHPFLQ NSFGVGSSPG RMSPRSMDPI SPMNGRLSAV  660
RERQQQQQQQ FRSLSSRDLG VNNPLSSVVG SPVSSRTNWG SPSGRLDWSV SGEELGRLKR  720
SSSFENGNNN GGEEPDLSWV QSLVKESPPE VMMRDNKYGG GPPDSSASDP NTEIDSLMES  780
LALADAY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617793.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2C9VHB20.0A0A2C9VHB2_MANES; Uncharacterized protein
STRINGLus100197090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]