PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10019652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 14732.6 Da PI: 5.0376 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 6 | 84 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p +f +h + ++ tle sg++Wev+l ++++g+++l++GW eF+k + Lk+gD++vF+l+++s f +v+vf+ Lus10019652 6 IPTEFEGRHRE-RLIGMFATLEVASGETWEVELVKNGGDGKIWLANGWGEFAKHQFLKQGDVLVFRLEQDSYF--HVMVFDP 84 77777666743.35678899*************99999999**************************999999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.071 | 1 | 85 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0016 | 4 | 85 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-18 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-18 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-13 | 5 | 83 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.67E-18 | 5 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MIYQYIPTEF EGRHRERLIG MFATLEVASG ETWEVELVKN GGDGKIWLAN GWGEFAKHQF 60 LKQGDVLVFR LEQDSYFHVM VFDPSTVSER IKCFSHDQVE VEEGFVVGNE TGKGEMGGGE 120 EKRRKVWK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10019652 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017972198.1 | 4e-14 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
STRING | Lus10019652 | 4e-89 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10019652 |