PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019481
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 526aa    MW: 58894.5 Da    PI: 5.3586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019481genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.8e-11161183426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C+f+++tG C++ ++CkF+H+
  Lus10019481 161 EDCSFYMKTGNCRFASNCKFNHP 183
                  89********************9 PP
2zf-CCCH201.2e-06225245727
                  SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                  ++++rt  CkyG  C+F+H++
  Lus10019481 225 QYYLRTEGCKYGKACRFSHSK 245
                  59*****************95 PP
3zf-CCCH39.59.2e-13274297326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+f++r+G CkyG++C+F+H+
  Lus10019481 274 EKECPFYMRNGSCKYGSNCRFNHP 297
                  689********************9 PP
4zf-CCCH28.72.3e-09413439127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f++tG Cky ++CkF+H++
  Lus10019481 413 PGQPDCSYFLKTGGCKYKSNCKFNHPK 439
                  5789*********************96 PP
5zf-CCCH33.76.2e-11460484226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++  C +++r+G+Ck+G+ C+F H+
  Lus10019481 460 DQDVCAYYSRYGICKFGPACRFDHP 484
                  5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.873157185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5157185IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6157184IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-8161183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4163182IPR000571Zinc finger, CCCH-type
SMARTSM003564.5222245IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.981225246IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4226245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4226244IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042271299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6272299IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10274297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5277296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023412440IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5412439IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-7414439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5417438IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4418437IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6456484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483458486IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4458485IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8461484IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4462483IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEQPQSANSF HDPNGTSHIE IQSPSPLDSA QDPDPQPSFH HDAPPPVHAA GKDEDELLRQ  60
QVENHLHLKE DAEEETEKKE VQIERDLCHL NGQTTEVDES EEQQLNNGES DGFGEMNVAY  120
LDDHHQMEKE EEAVEEDSGD MRSNGGWMIM QPQFPVRPEA EDCSFYMKTG NCRFASNCKF  180
NHPVKRKTQV TRERFKETEE SGKIECKIFC DDFFSCIAIY SSSAQYYLRT EGCKYGKACR  240
FSHSKVKTVA VPAKSPLVPF LEFNFLGLPI RLGEKECPFY MRNGSCKYGS NCRFNHPDPT  300
VVGGNEPSSA IGNGGSPSLH ASSHSKIPSW SPPPPRPALN ESPPFVPVMF PPNQGTNLGN  360
LDWNGYQAPL YPPPERVMPP PPPAYIMTNP VSETNFYTRH QQPMVVDEYP ERPGQPDCSY  420
FLKTGGCKYK SNCKFNHPKV RIGKSPSCIL SDKGLPLRPD QDVCAYYSRY GICKFGPACR  480
FDHPIQADSP TGSLDGHQFH GFENSASDEE DHRLGEKAKE IKISN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8299220.0EU829922.1 Linum usitatissimum clone LU0013G12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581492.11e-156zinc finger CCCH domain-containing protein 43
TrEMBLA0A067KGL01e-153A0A067KGL0_JATCU; Uncharacterized protein
STRINGLus100194810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-109C3H family protein