PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019431
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 300aa    MW: 33283.1 Da    PI: 8.1233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019431genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-0976101127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+ C  f   GtC+ G++C+FaHg+
  Lus10019431  76 FKTRMCAKFKT-GTCRNGENCNFAHGM 101
                  69*******99.*************95 PP
2zf-CCCH23.11.3e-07149172225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  k++lC+ f  + +C+yGdrC+F H
  Lus10019431 149 KMKLCKKFCNGEECPYGDRCNFLH 172
                  7899******66************ PP
3zf-CCCH41.91.6e-13189214126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f  tG+C++G++C+FaHg
  Lus10019431 189 WKTRLCSKFEITGHCPFGEKCHFAHG 214
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-873106IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-575101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.26375102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-1475108IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-676101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817147175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023147174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7147174IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5149172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-9149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-15184218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-10185219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666188216IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7188215IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10189214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSYSDSQHQF TQPCYQSGSD AIGIWPQFSM SGMNEQFDQP PYKRAKNSDD DNSIHLTNSR  60
MPSNPPVNRG TTCIFFKTRM CAKFKTGTCR NGENCNFAHG MQDLRQPPPN WQELAGVGSG  120
GGGGGGRVEE DNRPSPAVNW EDDQRIIHKM KLCKKFCNGE ECPYGDRCNF LHEDPAKFRS  180
ANNVKPVYWK TRLCSKFEIT GHCPFGEKCH FAHGLSELHA NGGRLEGDSA SQGTILSKPS  240
SVFGNGGNPS PYMTSSVAEE SEGRKKCLVK WNGRKKINRI YGDWLDDLPL AQNLTNVQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019431
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633978.11e-128zinc finger CCCH domain-containing protein 39
RefseqXP_021633979.11e-128zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-86C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A251JD931e-127A0A251JD93_MANES; Uncharacterized protein
STRINGLus100194310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-86C3H family protein