PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10019354
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 538aa    MW: 61164.7 Da    PI: 7.5873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10019354genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-17442526191
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+  l++s+ ++ +++ lp +f++++   +++++ +tl+de+g+++++k+   +++ +  l++GW++F+ a++L egD++vF+l+g+ +f+
  Lus10019354 442 FLVYLVRSHLGRWSWMGLPGPFCRANL--PRGDTIVTLQDEDGKEFNIKY--IGHRTG--LSTGWRQFCVAQNLLEGDVLVFQLVGNCRFR 526
                  5666889999999**********9994..356679***************..666655..9************************998884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004631.3E-16113IPR002401Cytochrome P450, E-class, group I
SuperFamilySSF482643.54E-861400IPR001128Cytochrome P450
PfamPF000672.5E-692378IPR001128Cytochrome P450
Gene3DG3DSA:1.10.630.107.1E-942402IPR001128Cytochrome P450
PRINTSPR004631.3E-1692110IPR002401Cytochrome P450, E-class, group I
PRINTSPR004631.3E-16197214IPR002401Cytochrome P450, E-class, group I
PRINTSPR003852.5E-10208225IPR001128Cytochrome P450
PRINTSPR004631.3E-16217243IPR002401Cytochrome P450, E-class, group I
PRINTSPR003852.5E-10261272IPR001128Cytochrome P450
PRINTSPR004631.3E-16340350IPR002401Cytochrome P450, E-class, group I
PRINTSPR003852.5E-10341350IPR001128Cytochrome P450
PROSITE patternPS000860343352IPR017972Cytochrome P450, conserved site
PRINTSPR004631.3E-16350373IPR002401Cytochrome P450, E-class, group I
SuperFamilySSF1019361.08E-20437528IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-18437528IPR015300DNA-binding pseudobarrel domain
CDDcd100175.97E-19440528No hitNo description
SMARTSM010191.8E-18442537IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633442533IPR003340B3 DNA binding domain
PfamPF023624.6E-16442526IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MVKQALFDKN GNFPKAQWGF AYARKIMGTG IVTNDGEKWS KIRKLANLSF HGVKLKSMVP  60
EMIDATENML RRWKDKEEVH EEIEVYEEFR MLTGEMISRT AFGTSFDEGR QICDMIVKMK  120
LLIDKNVFKF RLPIVSKIFK SRDYREVGRL ERRIRACILE IVSKREEDHG VVKDDYLGLL  180
IQAHHEREES SKISIDDLVD EFKTLYLAGH HTTNALISWI VLLLAIHQNW QQEARNEVFS  240
VFGRDESPDV DGISKLETMG MIINETLRLY PPVTALGVRR IDKDDVTLGK LTLHADIRLQ  300
IPTLCLHRNP GIWGEDANLF KPERFSEGVA KATNNNPTAF IPFGMGPRNC VGIDIGKDMV  360
RVALSMILQR FCFTLSPGYV HSPDPYIPTI SPGKGIQVIL HALCEHHEVR TDSLSSLKEV  420
KCPAMIRAEE VQLNLEPAFP SFLVYLVRSH LGRWSWMGLP GPFCRANLPR GDTIVTLQDE  480
DGKEFNIKYI GHRTGLSTGW RQFCVAQNLL EGDVLVFQLV GNCRFRVSTE FTLSSAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vcd_A6e-452737694448Cytochrome P450 3A4
5vce_A6e-452737694448Cytochrome P450 3A4
5vcg_A6e-452737694448Cytochrome P450 3A4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10019354
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873318.11e-148cytochrome P450 CYP749A22-like
RefseqXP_023924624.11e-148cytochrome P450 CYP749A22-like
TrEMBLA0A2N9F6B41e-147A0A2N9F6B4_FAGSY; Uncharacterized protein
STRINGLus100193540.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-25B3 family protein