PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018815
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 518aa    MW: 55873.2 Da    PI: 7.9042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018815genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.2e-29385443259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YY+C+++ +C+++k+ver++++p+++++tY++eHnh+
  Lus10018815 385 SDVWAWRKYGQKPIKGSPYPRGYYKCSTSkTCMARKHVERNKSNPEMFVVTYTDEHNHQ 443
                  79************************99889***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29375445IPR003657WRKY domain
PROSITE profilePS5081132.696379445IPR003657WRKY domain
SuperFamilySSF1182907.59E-25381445IPR003657WRKY domain
SMARTSM007741.7E-33384444IPR003657WRKY domain
PfamPF031069.6E-24386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MTDDDWDLFA VVRRCSTFSS TFTAAAATPA AVSSSFQSHL SCNPSSFSPY GVEQLNRGTS  60
SSTSIIAGAT PTAVVSSFQP HPPGNLSSFS PYGSEQLYRG TSSSTSITTS ATPTTTVSSS  120
FQPHPLCNPS SFSLYGSEQP YRASTSITTS TKPAIVSSSF QPHPPCDPSS YGSGQLYGRT  180
SSPSIAAAVK PIVVSSSFQP HPPYNPASYG YDQLYRRTSS STFTTPAAKP PVLFSSFHPH  240
PPCDFSPYNP EQLSRFFDLP PTPTAPPNNV SIGPVRINPT GDQLLHDSFK PFPTVVRSDH  300
PQQLPQSLQS NVAASTFVSP TLPMILPRPP FHLMECPFPP SSSVASSSAP GAKSKRRRLV  360
VEINYRNNQG IKKMVFQISI ADMCSDVWAW RKYGQKPIKG SPYPRGYYKC STSKTCMARK  420
HVERNKSNPE MFVVTYTDEH NHQPPAHRNC LAGTTRQNNK YSAAFFSSPE EDDKVQDPVG  480
NGGGGGAPAE AAPVEDDLFE GLEDLMSLSM VDCFPDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18375446878Probable WRKY transcription factor 4
2lex_A2e-18375446878Probable WRKY transcription factor 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354358KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018815
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100188150.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-40WRKY family protein