PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10018727 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18877.7 Da PI: 6.5111 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Lus10018727 31 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 80 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.45E-21 | 31 | 89 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-36 | 31 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 31 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 32 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.96E-27 | 32 | 90 | No hit | No description |
Pfam | PF00847 | 2.8E-11 | 32 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 70 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MEGRLCCSSD SNSTSSSTAE KRKHCGGGEK PYRGIRMRKW GKWVAEIREP NKRSRIWLGS 60 YSTPIAAARA YDTAVFYLRG PTARLNFPDL IYQDDHLPND DVSAASIRKK ATEVGAKVDA 120 FQTSLHHHAA ADDDDSHVSN TAAASPAAAA ARPAQQKPDL NEYPENSDED DE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-15 | 30 | 88 | 4 | 63 | ATERF1 |
3gcc_A | 7e-15 | 30 | 88 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10018727 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819909.1 | 2e-68 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 2e-50 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q9FH94 | 4e-50 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A2I4EKJ1 | 4e-67 | A0A2I4EKJ1_JUGRE; ethylene-responsive transcription factor RAP2-1-like | ||||
STRING | Lus10018727 | 1e-125 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 3e-50 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10018727 |
Publications ? help Back to Top | |||
---|---|---|---|
|