PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018578
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 387aa    MW: 42625.9 Da    PI: 5.0995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018578genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19188238256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Lus10018578 188 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 238
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-32187247No hitNo description
SMARTSM003806.2E-41188251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32188246IPR001471AP2/ERF domain
PROSITE profilePS5103222.972188245IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23188246IPR016177DNA-binding domain
PRINTSPR003676.1E-11189200IPR001471AP2/ERF domain
PfamPF008473.1E-12189238IPR001471AP2/ERF domain
PRINTSPR003676.1E-11211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAARNNTGK SKKGEFRNMR DSSSSSSSSA MAGRELRPLK KIRSPDRLDL SQQLAFLQQQ  60
QQFQHSLPNP PSSSSNSISN SPVFASKFPF AVDGCSSSSN WPINFPPPAQ PPQNPNQMIS  120
FGQNQNQSFM VANSFHHQQQ LFRYWNDTLN LSPRGQLVVG PDGCRFFRPS ATAMAATMPI  180
QPINTTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEDAAMAYDR EAFKLRGENA  240
RLNFPELFLN KQNPPPEESE SSPQVVTAEP PPNADTAEAE AEAEAEAETE HDSNSESAAS  300
AAADGGEMGW GEMADAWLNA IQEGWGPGSA VWDDLDANNN LFLNSQIPFQ SSNQQQGEGI  360
ISASSSSQSS SSPCFQMKPF FWKDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20187245160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088313.19e-98ethylene-responsive transcription factor ERF054
TrEMBLA0A1L6CB331e-99A0A1L6CB33_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100185780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-48ERF family protein