PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018400
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 326aa    MW: 36265 Da    PI: 8.1388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018400genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-062192561254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Lus10018400 219 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 256
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.189207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-12217274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.98E-6217260No hitNo description
Gene3DG3DSA:4.10.280.101.7E-8221261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGFGVGVSSS SPSSEDWNQR QHIGSGNYNS TSMLEDEMNS RGRPLNHNLS RLTNDFSSNP  60
IHGYPIQGLF ESDSQQNPIF VNNFPSPSAT YGIGNSLLNG LSPSWSKFQN PNHQNDNHHQ  120
DHLRFSNGVM PFWNNQTATQ TDSIQTGYAP TQTRFVVPAF NEKPTSCPSR SSTKSKKEEA  180
TNNTTKEWKP KTKKETGSES SFKRPRIETP SSLPTFKVRK EKLGDRITAL QQLVSPFGKT  240
DTASVLHEAI EYIKFLHDQV GVLSTPYMKN GNPIQHHLQG CDKLDQNEQD LRSQGLCLVP  300
ISSTFPVAHE TTADFWTPTF GGSFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873977.11e-89transcription factor bHLH112 isoform X1
TrEMBLA0A067JLF79e-84A0A067JLF7_JATCU; Uncharacterized protein
STRINGLus100184000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.19e-58bHLH family protein