PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018101
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 449aa    MW: 50845.1 Da    PI: 9.0494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018101genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.33.2e-83564351374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.......fsevsP 89 
                  lv+ Ll++Ae v++ +  +a  lL   +  +s++  + ++Rl+ yf +AL +r+ + s++++++a  ++e+ e+ +++ + a+          +e  P
  Lus10018101  56 LVQCLLNAAEEVDHCNYDQAIFLLDLCNSSSSKTSnNLTERLVYYFSQALCQRVRNkSGKHISNAPLSEENLEMGMKSCVEAVAGpspilgvIYEKIP 153
                  6899************************99998886889***************99788888887766666666666666666333444556****** PP

         GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                  ++++ +l+  qaI+e+ve+++r+HiiD+ i +G+QW aL+qaLasR++g+    l+iT+++  +s+ ++++ etg+rLa+fA+++++pf f++l++ +
  Lus10018101 154 FYQVRQLAGVQAIVESVEKAKRIHIIDLRIRNGMQWTALMQALASRKKGALvvILKITAIAV-TSDVENTVVETGKRLARFAKSMNIPFVFKTLAVPN 250
                  ***********************************************99765589*******.678899999**********************999* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                  + +++ +e++++ +E++a+ +  +lh+l +++ ++e     ++ +v++++Pkv+vv+e+ea+ ns++F++rf+e l +y a fd+++a l++++ +++
  Lus10018101 251 MLEIRKKEFELDLREVVAIYCENSLHKLIQKPDQIEA----FMGVVRNIRPKVMVVTEREANFNSTNFAHRFVEVLFHYGAYFDCIDACLGSDQGNKM 344
                  *****************************77777777....********************************************************* PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++E ++l+ ++  ++a+eg+e    ++t   Wr+ ++++ + +++ls +++++++lll +++ ++  +v+ +  s+v gWk+ p++s+S W+
  Lus10018101 345 VMESVFLRDQVNALLAKEGKE-MTTTTTIDVWRKFFSRFWMAEARLSPTTMETVNLLLDRFSeGKFCNVDMNGRSMVVGWKETPIFSLSTWK 435
                  *********************.888999**********************************777799***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.07430414IPR005202Transcription factor GRAS
PfamPF035141.1E-8056435IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MENSSSTVLD RRTPPFTSQE PSLLDIIRIA ALGLIHSSHH QSTIFQLPPY NKEVTLVQCL  60
LNAAEEVDHC NYDQAIFLLD LCNSSSSKTS NNLTERLVYY FSQALCQRVR NKSGKHISNA  120
PLSEENLEMG MKSCVEAVAG PSPILGVIYE KIPFYQVRQL AGVQAIVESV EKAKRIHIID  180
LRIRNGMQWT ALMQALASRK KGALVVILKI TAIAVTSDVE NTVVETGKRL ARFAKSMNIP  240
FVFKTLAVPN MLEIRKKEFE LDLREVVAIY CENSLHKLIQ KPDQIEAFMG VVRNIRPKVM  300
VVTEREANFN STNFAHRFVE VLFHYGAYFD CIDACLGSDQ GNKMVMESVF LRDQVNALLA  360
KEGKEMTTTT TIDVWRKFFS RFWMAEARLS PTTMETVNLL LDRFSEGKFC NVDMNGRSMV  420
VGWKETPIFS LSTWKFLLVK PLKRVNKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-325843425378Protein SCARECROW
5b3h_A2e-325843424377Protein SCARECROW
5b3h_D2e-325843424377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100181010.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-45GRAS family protein