PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018099
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 526aa    MW: 59394 Da    PI: 5.9531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018099genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.31.2e-821485123373
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 
                  + L+++Ae v  +++e+a +lL     l+s +g+ +qRl+ yf +AL++r+++ s  ++++ ++  e+ + +  ++    +l + +   P++++++l+
  Lus10018099 148 QYLMSAAEKVGCRNFEQAISLLDVCDSLSSRTGNLIQRLVYYFSNALRERVYNeSRVKISSLVEELEKLNIEeaVTAPSPILGVIYAKIPFYQVGQLA 245
                  679*************************************************955555555554444332221233333344559************* PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    qaI+e+v++++r+HiiD+ i +G+QW aL+qaLasR++ +p +l+iT+++ ++   ++ ++etgerLakfAe+l++pf f++ v+ ++ +++ +++
  Lus10018099 246 GVQAIVESVKKAKRIHIIDLRIRNGMQWTALMQALASRRKRTPeMLKITAIVTSS--ASKLVRETGERLAKFAESLNIPFAFRMAVVPNMLEIDRKQF 341
                  ************************************999666659********54..9999***********************9999********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++pg+a+a+ + ++lh l     + + + d+++ ++++++P+v+vv+e ea++n+ +F +rf+eal +y a fd++++ l  ++++++ +E ++lg+
  Lus10018099 342 DLDPGDAVAIFSEYALHDLI----PNQTQLDAFMLVMRDVKPTVMVVIEIEAKLNGLNFGHRFVEALFHYGAYFDCVDSCL-GTKDDKMAMESVFLGE 434
                  *******************9....33444677************************************************8.56788999****9**9 PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++  v+  e +    r+ t e Wr+ ++++ + +  ls +++++++lll +++ ++  +v+++  +lv+gWk+ p++s+SaW
  Lus10018099 435 QVNAVLVEEMK----RTATIEVWRKFFGRFWMVEDDLSPTTMETVNLLLCRFAnGKCCTVDKDGRCLVMGWKGTPIFSLSAW 512
                  99777766655....699999********************************8888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.196120492IPR005202Transcription factor GRAS
PfamPF035144.2E-80148512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MFHAGNTAWE TTDDDDDETM LVDLNALLQH HWLATMLPDD HHPQPCSVDH HSLQHDHQQP  60
LFSSSSLELI RSSVRKSFIR NHHRIAADDD YSTPDHEEPS LTEIIRIAAA AFIKSSSKPP  120
AGDDCAPFLD LNFSSYNEDV TKKVQHFQYL MSAAEKVGCR NFEQAISLLD VCDSLSSRTG  180
NLIQRLVYYF SNALRERVYN ESRVKISSLV EELEKLNIEE AVTAPSPILG VIYAKIPFYQ  240
VGQLAGVQAI VESVKKAKRI HIIDLRIRNG MQWTALMQAL ASRRKRTPEM LKITAIVTSS  300
ASKLVRETGE RLAKFAESLN IPFAFRMAVV PNMLEIDRKQ FDLDPGDAVA IFSEYALHDL  360
IPNQTQLDAF MLVMRDVKPT VMVVIEIEAK LNGLNFGHRF VEALFHYGAY FDCVDSCLGT  420
KDDKMAMESV FLGEQVNAVL VEEMKRTATI EVWRKFFGRF WMVEDDLSPT TMETVNLLLC  480
RFANGKCCTV DKDGRCLVMG WKGTPIFSLS AWNFLQAKPS SSENR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3115451327379Protein SCARECROW
5b3h_A2e-3115451326378Protein SCARECROW
5b3h_D2e-3115451326378Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100180990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.18e-48GRAS family protein