PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018009
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 374aa    MW: 42311.8 Da    PI: 7.7828
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.2e-1185116334
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                  ++k +rr+++NReAAr+sR+RKka++++Le  
  Lus10018009  85 ADKTQRRLAQNREAARKSRLRKKAYVQQLESS 116
                  79***************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-783162IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-884127No hitNo description
PfamPF001704.0E-885120IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.11785127IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-787129No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
PfamPF141442.0E-24170250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMSSPTTQLA ILRGMGIYEP FQQISSWATT DPFRGDNHNI LNNITTAASP AMPVESAAPE  60
NKAENGSHAS TEPYKSDQEA GGRPADKTQR RLAQNREAAR KSRLRKKAYV QQLESSRLKL  120
AQLEQELVRA RQQGVYINNS LDFGSSRTLN SGIATFEMEY AHWVEEQHKQ VSELRRAMQA  180
HVGDVELRML LENGLNHFNN LFLMKADAAR ADVFYLISGK WRTSVERFFV ERFFLWIGGF  240
RPSELLNVLL PQLEPLTDPQ HSEICTLRQS CQQAEDALSQ GVEKLQQTLS QSMAVDQSIA  300
GSYRDQMAAS IERLEGLEGF ANQADHLRSQ TLHHMSRILT TRQAARFMLL LGEYFERLRA  360
LSSLWSARPR EPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308620.0EU830862.1 Linum usitatissimum clone LU0032G12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513852.10.0transcription factor TGA7
RefseqXP_015571562.10.0transcription factor TGA7
SwissprotQ93ZE21e-147TGA7_ARATH; Transcription factor TGA7
TrEMBLB9RJD30.0B9RJD3_RICCO; Transcription factor TGA7, putative
STRINGLus100180090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-139bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]