PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10017492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SRS | ||||||||
Protein Properties | Length: 195aa MW: 21412.8 Da PI: 8.4288 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 69.5 | 1e-21 | 22 | 80 | 4 | 62 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 + +C+dCGnqak++C + RCR CC+ r ++C+thv stWvp++ rr +q+++ +s++ Lus10017492 22 AGRRCEDCGNQAKRECRYWRCRRCCNRRKLECQTHVSSTWVPTSLRRLQQATARGSSAT 80 4569******************************************9987766554433 PP | |||||||
2 | DUF702 | 59.1 | 1.7e-18 | 83 | 163 | 86 | 154 |
DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssv..........dd..geeelaYqtavsigGhvfkGiLydqGlee 154 +s++l+++++++ +e ++P+ev s+a f+c +v+s dd +e+aY+t+vsigGh+fkGiLydqG+++ Lus10017492 83 PTSQQLHHHHNPSDMESDDFPREVTSMATFHCCKVASSmrldsgrnhgDDdrLYDEYAYRTSVSIGGHLFKGILYDQGPQN 163 566778889999999999****************9763244333333222123479**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.1E-33 | 23 | 162 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.4E-18 | 26 | 65 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.0E-15 | 102 | 161 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MMNGGGETSV GSMRGGGGGG AAGRRCEDCG NQAKRECRYW RCRRCCNRRK LECQTHVSST 60 WVPTSLRRLQ QATARGSSAT HLPTSQQLHH HHNPSDMESD DFPREVTSMA TFHCCKVASS 120 MRLDSGRNHG DDDRLYDEYA YRTSVSIGGH LFKGILYDQG PQNERRQSSA VAGVVVAPPP 180 PFSCTFPLPT LHTE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10017492 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236969.1 | 2e-41 | PREDICTED: protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A251MV94 | 2e-38 | A0A251MV94_PRUPE; Uncharacterized protein | ||||
STRING | Lus10017492 | 1e-144 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-21 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Lus10017492 |