PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017434
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 393aa    MW: 44408.5 Da    PI: 9.3949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017434genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567e-18147237199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v +  +l lp +f+++h  +k ++ +++lede+g  ++ k+     sgr  l++GW+ F+ + +L++gD vvF+l++ ++f  +v +fr
  Lus10017434 147 FVKSMVRSHVYSCFWLGLPSQFCASHL-PK-RDSDIILEDETGSIYDTKY----LSGRAGLSGGWRAFALERKLNDGDAVVFELVEPERF--KVYIFR 236
                  89************************4.44.4459***************....445556***********************9987777..999999 PP

                  S CS
           B3  99 k 99 
                  +
  Lus10017434 237 T 237
                  7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-21140238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-22141237IPR015300DNA-binding pseudobarrel domain
CDDcd100173.79E-27145236No hitNo description
PROSITE profilePS5086313.225147238IPR003340B3 DNA binding domain
PfamPF023628.3E-16147237IPR003340B3 DNA binding domain
SMARTSM010195.2E-24147238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAMVSEDATD NTYEEARKQR LEENRKRFQD LGISDLSRSL SKVSNSPTAT SKHRQPKPRS  60
KPGDEFQPRR SSRPRNHITS YVDDFQADLD LSAKRRRSNG SRLNSSWTSY VVRPLEEVIL  120
ASFEERERAR IAAERFEETL PSDHPVFVKS MVRSHVYSCF WLGLPSQFCA SHLPKRDSDI  180
ILEDETGSIY DTKYLSGRAG LSGGWRAFAL ERKLNDGDAV VFELVEPERF KVYIFRTTSD  240
SGRKPNADAV VCKESDGDQQ SHKRQRVKED NDDNAADEEG AAEPTPRRLT GRKTAAKNQM  300
KKNGLDETAR RKSGRRSTVA ASDEMNEKGS TVEEGRTEEH ALVPEEQKGK PKPVTDEKAV  360
EEEEAVCAKE VKPAAIKTRK KAAPRLFRKK VY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376389KTRKKAAPRLFRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017434
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636354.11e-108putative B3 domain-containing protein At5g58280
SwissprotQ9FHB28e-63Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A067LLN21e-90A0A067LLN2_JATCU; Uncharacterized protein
STRINGLus100174340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-54B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]