PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017319
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 375aa    MW: 39305.8 Da    PI: 10.7365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017319genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.9e-09322370247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+  E e l d+v+ +G+g Wk+I +  +     R + ++k++w+++
      Lus10017319 322 NPWSRAEVEALEDGVRDYGTGLWKAILKSRQqvlGARNEVDLKDKWRNL 370
                      58*******************************999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.4316374IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-10316372IPR009057Homeodomain-like
SuperFamilySSF466897.99E-12318372IPR009057Homeodomain-like
SMARTSM007171.0E-4320373IPR001005SANT/Myb domain
PfamPF002491.2E-6322370IPR001005SANT/Myb domain
CDDcd116603.21E-15323372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTRKNTAGST HDSLTAEAVS KSGLMTRKNT AGSTHDSLTA EAVSKSGLMT RKNTAGSTHD  60
SLTAEAVSKS GLMTRKNTAG STHDSLTAEA VSKSGLMTRK NTAGSTHDSL TAEAVSKSGL  120
MTRKNTAGST HDSLTAEAVS KSGLMTRKNT AGSTHDSLTA EAVSKSGLMT RKNTAGSTHD  180
SLTAEAVSKS GLMTRKNTAG STHDSLTAEA VSKSGLMTRK NTAGSTHDSS TAEAPQNISH  240
PASVLGIPAE VGRPTPSSSQ KDCHESQQAD KNKAVGESSR HPNVPMVDAV CSSADGPSGR  300
KRTRKTVAMP PPLAKKLRRK VNPWSRAEVE ALEDGVRDYG TGLWKAILKS RQQVLGARNE  360
VDLKDKWRNL HKHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017319
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100173190.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.27e-10MYB_related family protein