PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 64484.9 Da PI: 4.4657 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 292.9 | 8.5e-90 | 197 | 564 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 e Ll +Ae + ++++e+a +lL++ ++s +gdp+qRl+ yf +AL +r+ r + ++++++ p ++ + + + f+e P+ ++s ++a Lus10016897 197 EFLLMAAEKIGDEQFERAGSLLTECDLQSSATGDPVQRLVYYFSQALWERIDRqTKKQTVEKSPKIPKVQAMMMPPRECFLEFYEKVPFAQVSEFAAI 294 67999************************************************33333333333333332223333344445**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 qa++++v++++r+Hi+Df+i++G QW ++qaL sR+e++p +++iT++g + ke+leetg+rL fAe+++++f+f+++++++l dl+ e+++ Lus10016897 295 QAVVDSVATSRRIHIVDFNIKNGEQWTIFMQALVSREESTPvdHVKITAIGT---VGKEMLEETGKRLIGFAEAMKLSFSFKLVMVEDLLDLKEEMFE 389 *************************************888888*********...79***************************************** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++ +E++aV + + +l ++ v+ d v+k++++++P v+vv+e e++hns+ F++rf+eal y+sa fd+le+ + r++ +r + E ++g+ Lus10016897 390 IDCDETVAVLSEYLFTTLISSVVK----LDYVMKMIWKIKPCVMVVTEVESNHNSPVFVNRFIEALFYVSAYFDCLETCMERDNPHRLFAESSFFGEG 483 *************77777744444....556******************************************************************* PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + vva+eg+er r+ t+ Wr+ ++++G++++ ls + + qa+l+ +k++ ++ +v+ + +sl+ gWk+ p+ sv+aW Lus10016897 484 TKIVVANEGEERAIRNVTMDVWRAYFRRFGMEEADLSLSCVYQAELVAKKFPcWRSCTVDLDGKSLIVGWKGTPIHSVTAW 564 *****************************************************9*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.256 | 169 | 544 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-87 | 197 | 564 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MAHQISSFQF NNGGIQDQHL SVSNQSFDSD PISLFESWIA RDHDHQSLFP SYDNNDEDYP 60 LIHHQSIMIS DPQAISDDFN GIVNRQVSVD SSDEQIINGN LEIPNSDSAS SLFDMLRVAR 120 NGSRKRNSSF LTVHKSSDDS VIDAVDSVGF STEELIRIAG AKFIHFSSEL GDSVTSSFDL 180 TFFGLSDEEL KNVELAEFLL MAAEKIGDEQ FERAGSLLTE CDLQSSATGD PVQRLVYYFS 240 QALWERIDRQ TKKQTVEKSP KIPKVQAMMM PPRECFLEFY EKVPFAQVSE FAAIQAVVDS 300 VATSRRIHIV DFNIKNGEQW TIFMQALVSR EESTPVDHVK ITAIGTVGKE MLEETGKRLI 360 GFAEAMKLSF SFKLVMVEDL LDLKEEMFEI DCDETVAVLS EYLFTTLISS VVKLDYVMKM 420 IWKIKPCVMV VTEVESNHNS PVFVNRFIEA LFYVSAYFDC LETCMERDNP HRLFAESSFF 480 GEGTKIVVAN EGEERAIRNV TMDVWRAYFR RFGMEEADLS LSCVYQAELV AKKFPCWRSC 540 TVDLDGKSLI VGWKGTPIHS VTAWNFNCE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-36 | 214 | 565 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016897 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M5XKD7 | 1e-165 | M5XKD7_PRUPE; Uncharacterized protein | ||||
STRING | Lus10016897 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-54 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10016897 |