PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 197aa MW: 22351.1 Da PI: 4.3159 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161 | 1e-49 | 10 | 194 | 84 | 273 |
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 f + P +s+++a qaI+++v++++r+Hi+Df+i++G QW+ ++qaL + + ++ +l+iT++g +k++leetg+rL +fA+++ ++f+f+ Lus10016895 10 FCDKVPSGPVSQFAAIQAIVDSVAKATRIHIVDFNIKHGEQWIIFMQALVEENwkNPVEHLKITAIGT---MRKDMLEETGQRLIDFAQAMALSFSFK 104 6666788899****************************************999756666*********...67************************* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +++++++ dle ++++v+++E++aV + l ++ s ++ d+v+kl+++l+P v+vv+e e++ ns+ F++r++e l sa+f +le+ Lus10016895 105 MIMVEDFMDLEQDMFEVDSDETVAVLAEYLLTTII----SRVEKVDSVMKLIRGLNPCVMVVTEVESNQNSPVFVNRLVEMLFSASAFFYCLEV 194 *****************************999998....44444778*******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.954 | 1 | 196 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-47 | 10 | 194 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MPTRECFLEF CDKVPSGPVS QFAAIQAIVD SVAKATRIHI VDFNIKHGEQ WIIFMQALVE 60 ENWKNPVEHL KITAIGTMRK DMLEETGQRL IDFAQAMALS FSFKMIMVED FMDLEQDMFE 120 VDSDETVAVL AEYLLTTIIS RVEKVDSVMK LIRGLNPCVM VVTEVESNQN SPVFVNRLVE 180 MLFSASAFFY CLEVCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-21 | 6 | 196 | 79 | 273 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016895 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028947847.1 | 7e-63 | DELLA protein RGL1-like | ||||
TrEMBL | B9HWZ7 | 4e-61 | B9HWZ7_POPTR; Uncharacterized protein | ||||
STRING | Lus10016895 | 1e-143 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-30 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10016895 |