PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016894
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 408aa    MW: 46077.9 Da    PI: 4.647
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016894genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS212.22.9e-6511340374373
         GRAS  74 sseelaalkl.......fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetge 163
                  +                f+e  P+ +++ ++a qa+ ++v++++r+Hi+Df++++G QW  ++qaL sR+ +   +l+iT +g  e  +   le+tg+
  Lus10016894 113 MN-------QprecfleFYEKIPFGQVTAFAAIQAVIDSVANATRIHIVDFNLKHGEQWTIFMQALVSREeNRVDHLKITSIGILE--KDLLLEQTGK 201
                  22.......12344556*****************************************************55566*********66..999******* PP

         GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                  rL +fAe++ ++f+f+v+++++++dl+ e++++++ +E++aV + +   +l     +l ++ d+v+k++++l+P v+v +e e++ ns+ F++rf+ea
  Lus10016894 202 RLVEFAETMALSFSFKVIMVEDFTDLKEEMFEIDRsQESVAVLSEYLFSTL----IPLVEKLDRVMKVIWKLEPCVMVTTEVESNQNSPVFVNRFIEA 295
                  ***********************************9********9955555....5888889************************************ PP

         GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                  l +   +f ++e     +s  r++vE ++lg+ i+ +va+eg+er  r+ ++  Wr+ ++++G++++ ls + + qa+l+ +k++ +   +ve + +s
  Lus10016894 296 LFFGG-VF-CMER----DSPSRMFVESMVLGEPIRIIVANEGEERGIRNVKMDVWRACFRRFGMEEADLSFSCVYQAELVANKYPcWSCCTVEIDGKS 387
                  *7655.55.5554....599*****************************************************************9999********* PP

         GRAS 358 lvlgWkdrpLvsvSaW 373
                  l+ gWk+ p  sv+aW
  Lus10016894 388 LIVGWKGTPTHSVTAW 403
                  **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.1111383IPR005202Transcription factor GRAS
PfamPF035149.8E-63113403IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MHEKSKIPDA ASGLFETSIN VADPVGGLST EEILRITGAR FIQSYSKSVE SVMKPFHISF  60
SGLSDEQLEN VELAEFMLNA AEKVGDGQFD RARNLLTTGK ETLQNSASVH KIMNQPRECF  120
LEFYEKIPFG QVTAFAAIQA VIDSVANATR IHIVDFNLKH GEQWTIFMQA LVSREENRVD  180
HLKITSIGIL EKDLLLEQTG KRLVEFAETM ALSFSFKVIM VEDFTDLKEE MFEIDRSQES  240
VAVLSEYLFS TLIPLVEKLD RVMKVIWKLE PCVMVTTEVE SNQNSPVFVN RFIEALFFGG  300
VFCMERDSPS RMFVESMVLG EPIRIIVANE GEERGIRNVK MDVWRACFRR FGMEEADLSF  360
SCVYQAELVA NKYPCWSCCT VEIDGKSLIV GWKGTPTHSV TAWNFDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2911940479375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223345.11e-129PREDICTED: DELLA protein RGL1-like
TrEMBLM5XKD71e-125M5XKD7_PRUPE; Uncharacterized protein
STRINGLus100168940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-43RGA-like 1