PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 593aa MW: 67524.4 Da PI: 4.8976 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 282.2 | 1.5e-86 | 216 | 583 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkf 93 lve Ll++Ae v ++++e+a++lL++ + ++sp+gd++qRl++yft+AL++r+ r k+ + s++++ s++e+++ f+e P+ ++ Lus10016893 216 LVEFLLTAAEKVGDEQFERARNLLTECELQSSPSGDSVQRLVHYFTRALRERIDR------KTGKGSDEKSAASIHEIFMPPKecfleFYEKVPFGQV 307 5789***************************************************......444444444444444444432224467********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 s ++a qa++++v++++r+Hi+Df+i++G QW+ ++qaL sR+ ++ +l+iT++g ++ leetg+ L+ fAe++ ++f+f++++++ + dle Lus10016893 308 SEFAAIQAVVDSVANATRIHIVDFNIKNGEQWIIFMQALVSREaNPVDRLKITAIGT---MGRDLLEETGKWLTGFAETMALSFSFKLIMVEGFMDLE 402 *******************************************55556*********...689*********************************** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 ++++v+++E++a+ + l +l s+e+ d v++++++l+P v+vv+e e++ ns+ F++rf+e+l y sa+fd+le+ + r+s +r++ E + Lus10016893 403 QDMFEVDRDETVAILAEYILTTLI---SSIEK-LDYVMNVMRHLNPCVMVVTEVESNQNSPVFVNRFIETLFYTSAFFDCLEVCMDRDSPHRMFAESR 496 ******************999999...55555.888************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++g+ ++ vva+eg+er+ r ++e+Wr ++++ ++++ ls + qa+l+ +k++ ++ +v + +sl+ Wk+ p+ sv+aW+ Lus10016893 497 FFGEGAKIVVAAEGEERVIRSVKMETWRGYFGRSRMEEADLSFSCLYQAELVSKKFPsWRFCSVGRDGKSLIVRWKGTPIHSVTAWK 583 *********************************************************6666788899999****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.412 | 190 | 562 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-84 | 216 | 583 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MADQIFSFQF NHAGIQDQLP NHQNFHSDPF SLFEGWISPQ ASSDHHQHDL QYFPFLSYEY 60 NEPIHHENHH ISVPISELDE MIRRQVGVND KPQALSELDE LIYSTQVPVN EKSIPKNPRI 120 STCGLSSPLF DLLRGPTNGS RKRLNNNDAG TRVCKTINND TVDAVDSVRL MSTEELVRIA 180 GARFIQSSYK SGDLVSKPCD FSFSGLSDDE FRNVELVEFL LTAAEKVGDE QFERARNLLT 240 ECELQSSPSG DSVQRLVHYF TRALRERIDR KTGKGSDEKS AASIHEIFMP PKECFLEFYE 300 KVPFGQVSEF AAIQAVVDSV ANATRIHIVD FNIKNGEQWI IFMQALVSRE ANPVDRLKIT 360 AIGTMGRDLL EETGKWLTGF AETMALSFSF KLIMVEGFMD LEQDMFEVDR DETVAILAEY 420 ILTTLISSIE KLDYVMNVMR HLNPCVMVVT EVESNQNSPV FVNRFIETLF YTSAFFDCLE 480 VCMDRDSPHR MFAESRFFGE GAKIVVAAEG EERVIRSVKM ETWRGYFGRS RMEEADLSFS 540 CLYQAELVSK KFPSWRFCSV GRDGKSLIVR WKGTPIHSVT AWKFNTESEV YV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-36 | 239 | 583 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016893 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224772.2 | 1e-158 | DELLA protein RGL1 | ||||
TrEMBL | M5XKD7 | 1e-157 | M5XKD7_PRUPE; Uncharacterized protein | ||||
STRING | Lus10016893 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 7e-49 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10016893 |