PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 529aa    MW: 58581.5 Da    PI: 5.4377
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016890genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.24.2e-741355071374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l+e Ll+ A+ +  g+ ++a  lL      as++g  p+qR+a yf +AL++r+a+ ++   ++l+          ++ +a+++ +   P+   s+l+
  Lus10016890 135 LIENLLSSADNLGRGNYKRALGLLDLCDCSASQTGpCPVQRAAYYFSRALRQRIAN-TTPFEATLT-------CGNTAKSAVEIVHTRVPFSMASQLA 224
                  57899******************************99******************9.333333333.......355566788888899********** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp.egpp...slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  a qa+le v ge+r+H++D+ i  Gl  +aL+qaL+ sR  +++p    l++T+v+s +s++++++ etg+rL++fA+ +++pf f+v  +++ +  +
  Lus10016890 225 AVQAVLENVVGEKRIHVVDLKIRTGLFIIALMQALSsSRGlKNKPsleLLKVTAVAS-DSSEERSMAETGRRLSNFAHGMRIPFLFKVAKEDKSTGPH 321
                  ************************************55558555524468*******.667999***********************96666777788 PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....lpreseerik 284
                   ++ + +p+Ea++V + +++  l +++  le     ++k+v+sl P+v+vv+e ea+hns++F +rf+eal + +a fd++++      + ++e+r+ 
  Lus10016890 322 KSQVEQEPKEATVVYSEYAISLLIAKPSRLEA----MMKFVRSLHPRVMVVIETEANHNSKDFGHRFVEALFTSAARFDCVAECmdvvGGCTAEARTA 415
                  89999999*************99987777777....********************************************9766233234567***** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  vE+++l+++i+nvv +eg++r+ r  + + Wr+ + ++ + +++ls+ a + akl++++++      v  ++++sl+lgWkd pLv+vSaW+
  Lus10016890 416 VEAVYLNERIRNVVVAEGDDRVIRDVRIGVWRKYFARCRMLEIQLSKLALNHAKLVVSRFPcAASCLVRvDNRKSLLLGWKDTPLVFVSAWK 507
                  *************************************************************7666666646678999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.717109485IPR005202Transcription factor GRAS
PfamPF035141.4E-71135507IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDIWQQILEL NHVEFQSDDD EEIDCTEDDN EEDDEEEQTE EPIEFAGAAA SFGLLRDRYN  60
KTTSSSASET TNQVLSTSEI IKLAGMRIIE SLTSSSQHGD VLSILDNPFM IESSSSSSQN  120
DTEGLSQEEV KNVELIENLL SSADNLGRGN YKRALGLLDL CDCSASQTGP CPVQRAAYYF  180
SRALRQRIAN TTPFEATLTC GNTAKSAVEI VHTRVPFSMA SQLAAVQAVL ENVVGEKRIH  240
VVDLKIRTGL FIIALMQALS SSRGLKNKPS LELLKVTAVA SDSSEERSMA ETGRRLSNFA  300
HGMRIPFLFK VAKEDKSTGP HKSQVEQEPK EATVVYSEYA ISLLIAKPSR LEAMMKFVRS  360
LHPRVMVVIE TEANHNSKDF GHRFVEALFT SAARFDCVAE CMDVVGGCTA EARTAVEAVY  420
LNERIRNVVV AEGDDRVIRD VRIGVWRKYF ARCRMLEIQL SKLALNHAKL VVSRFPCAAS  480
CLVRVDNRKS LLLGWKDTPL VFVSAWKFVG PNRKRRIVVD DTTSSPVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2614250631378Protein SCARECROW
5b3h_A1e-2614250630377Protein SCARECROW
5b3h_D1e-2614250630377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100168900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-41RGA-like 2