PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016888
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 350aa    MW: 39497.6 Da    PI: 8.0069
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016888genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS197.58.3e-6159330102374
         GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  + e++ +++r+H iD++i+ Gl+W+ L+qa  sR+  +   +RiT++ +   g  e++++tg+rL++fA++ g++f f+++++ +   l+ ++L++++
  Lus10016888  59 LTESAVKAKRIHGIDLQIKSGLHWIGLMQAVESRTdYPIEFFRITALCA---GPVEQVRTTGDRLSDFARSKGINFCFKIVMVGDALHLTDSMLEMDE 153
                  56777788***************************666679******99...89**************************99999999********** PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErellgr 292
                  +E++ V + ++  ++ +++  +e     ++++++sl+ ++vvv+e+e + ns+ F +rf+e+l  y a+fds+++ ++  +    e r+ +E  ++gr
  Lus10016888 154 KETVMVYSEHSFATMISQPDRMEA----FMRVMRSLNLRIVVVTEKEGKNNSPHFSTRFVETLFNYGAVFDSVDTCVGDGNddnvECRMYLESGIMGR 247
                  ***************977776666....*************************************************9988778899*********** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   i+n+vaceg+er+ r  ++  Wr+ ++++ + + +ls  + +q++ + ++++ ++  +v  + + +v+gWk+ p++svS W+
  Lus10016888 248 MISNIVACEGEERVIRGVSADVWRAFFRRFEMVEKKLSPVVWEQVRFVQETFQnGEFCTVGRDGKVMVIGWKGMPMFSVSTWK 330
                  *****************************************************555567778888888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.2971309IPR005202Transcription factor GRAS
PfamPF035142.9E-5859330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAHVELVWRL SKPTALVSCG AYQGPPRNRS AISTIASIRA LTSSPNNCNT LPQPTVTELT  60
ESAVKAKRIH GIDLQIKSGL HWIGLMQAVE SRTDYPIEFF RITALCAGPV EQVRTTGDRL  120
SDFARSKGIN FCFKIVMVGD ALHLTDSMLE MDEKETVMVY SEHSFATMIS QPDRMEAFMR  180
VMRSLNLRIV VVTEKEGKNN SPHFSTRFVE TLFNYGAVFD SVDTCVGDGN DDNVECRMYL  240
ESGIMGRMIS NIVACEGEER VIRGVSADVW RAFFRRFEMV EKKLSPVVWE QVRFVQETFQ  300
NGEFCTVGRD GKVMVIGWKG MPMFSVSTWK FFRPAKLVSG RKHLRVEFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-1859329120378Protein SCARECROW
5b3h_A4e-1859329119377Protein SCARECROW
5b3h_D4e-1859329119377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100168880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-33RGA-like 1