PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016886

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 448aa MW: 49927 Da PI: 8.1549

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016886	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	244.2	5.4e-75	59	431	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfshlt 97 lLl++ + ++s++l++ ++L+ + l+s +g+++qRl++yft+ L++++++s + + + +++++ ss + al + s P +++++++ Lus10016886 59 LLLAASHKLASKQLQQSIKFLSWCQFLSSATGTSVQRLVHYFTKSLQEKIFGSEIGWEEFGEQRSSTDLAptetSSCSNPALIACSLQLPHVQVTQFA 156 78999999*****************************************96555444444444443332112222223333356667***** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 q++ e v++++rv iD+ i G++ L+qaLa+R+++ +l +T+v+ + + s++++eetg+rLa+fAe+l++p++fn +++ ++ dl+ e++ Lus10016886 157 GIQTVAENVATAKRVRLIDLAIRSGGHCTVLMQALANRQSPIEMLTVTAVVTGKLKsSEQRIEETGKRLASFAETLNIPLRFNYIIVPTVRDLTEEMF 254 ************************************************88778************************************* PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++ gE++aV l ++ ++ +sles +++++++l+P +vv+e ea+h+s++ +erf a+++y a+fd+le l+r++ +r+++E +g+ Lus10016886 255 DIGDGETVAVYARNILRNVRAQAGSLES----LIRVLRNLNPCAIVVTELEANHDSTEIVERFEGAMSTYGAVFDCLEDCLGRADGNRRVMEST-VGQ 347 ************************....*********************************************************9.* PP GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ei++v++ +g+e r+ rh ++e+Wr+ ++++G+ ++++s + qa lllr+++ ++ +v+ + ++lv gWk+ pL svSaW+ Lus10016886 348 EIRDVLTGAGEEeRVFRHMRVEEWRDYFGRVGMVEMEMSRSSFYQAALLLRNFNaGESCTVDRNGKCLVTGWKGTPLHSVSAWK 431 *****999877*************************************9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.425	30	410	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-72	59	431	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MAAGNRRLST GETIQVAKAR FLQLSSQHRV DVSKLKHFFD ASQFNLSGEE IKDVELLLLL 60 LAASHKLASK QLQQSIKFLS WCQFLSSATG TSVQRLVHYF TKSLQEKIFG SEIGWEEFGE 120 QRSSTDLAPT ETSSCSNPAL IACSLQLPHV QVTQFAGIQT VAENVATAKR VRLIDLAIRS 180 GGHCTVLMQA LANRQSPIEM LTVTAVVTGK LKSSEQRIEE TGKRLASFAE TLNIPLRFNY 240 IIVPTVRDLT EEMFDIGDGE TVAVYARNIL RNVRAQAGSL ESLIRVLRNL NPCAIVVTEL 300 EANHDSTEIV ERFEGAMSTY GAVFDCLEDC LGRADGNRRV MESTVGQEIR DVLTGAGEEE 360 RVFRHMRVEE WRDYFGRVGM VEMEMSRSSF YQAALLLRNF NAGESCTVDR NGKCLVTGWK 420 GTPLHSVSAW KFYRQVPKRP RGKKYTA*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MAAGNRRLST GETIQVAKAR FLQLSSQHRV DVSKLKHFFD ASQFNLSGEE IKDVELLLLL  60
LAASHKLASK QLQQSIKFLS WCQFLSSATG TSVQRLVHYF TKSLQEKIFG SEIGWEEFGE  120
QRSSTDLAPT ETSSCSNPAL IACSLQLPHV QVTQFAGIQT VAENVATAKR VRLIDLAIRS  180
GGHCTVLMQA LANRQSPIEM LTVTAVVTGK LKSSEQRIEE TGKRLASFAE TLNIPLRFNY  240
IIVPTVRDLT EEMFDIGDGE TVAVYARNIL RNVRAQAGSL ESLIRVLRNL NPCAIVVTEL  300
EANHDSTEIV ERFEGAMSTY GAVFDCLEDC LGRADGNRRV MESTVGQEIR DVLTGAGEEE  360
RVFRHMRVEE WRDYFGRVGM VEMEMSRSSF YQAALLLRNF NAGESCTVDR NGKCLVTGWK  420
GTPLHSVSAW KFYRQVPKRP RGKKYTA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-26	67	430	29	377	Protein SCARECROW
5b3h_D	2e-26	67	430	29	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016886

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021607512.1	1e-157	DELLA protein RGL1-like
TrEMBL	A0A2C9W965	1e-155	A0A2C9W965_MANES; Uncharacterized protein
STRING	Lus10016886	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	5e-46	RGA-like 2

Link Out ? help Back to Top
Phytozome	Lus10016886