PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016777
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 354aa    MW: 40239.1 Da    PI: 6.3532
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016777genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.2e-1629114999
                  HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                   + +++ l +p kf++++  g++       +l+ +sg +W v +   +   +++l++GW eFv+++ L+ g f+vF++++  s+f   v +++k
  Lus10016777  29 ETIRHKKLLIPGKFIQKYgqGLV----NFAILKVPSGVKWVVSV--VRDEIGVWLSDGWHEFVESHSLEHGHFLVFEYEEGsSSF--SVVICDK 114
                  4556778***********54433....3589999**********..999999**************************9765777..9999987 PP
2B348.81.2e-15255345198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff ++++s +l+++ l++p +f ++h gk  +s++l++ d   ++W+v l   ++s+ +++t+ W+ F ++n Lk gD+++F+ ++r+    +v++fr
  Lus10016777 255 FFFIEITSKMLTRKDLYVPVSFSTNHIGKDDKSVKLQVCD---KTWSVAL--MRYSKYVYFTDDWNLFINENSLKPGDVCIFESVQRMLL--NVTIFR 345
                  56678899******************66667888888777...*******..*******************************6665444..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1921115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-1721113No hitNo description
SuperFamilySSF1019361.77E-1721114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.26721115IPR003340B3 DNA binding domain
SMARTSM010191.1E-1122115IPR003340B3 DNA binding domain
PfamPF023624.6E-1429114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-20248345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-20249345IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-13254345No hitNo description
PROSITE profilePS5086312.294255347IPR003340B3 DNA binding domain
PfamPF023627.5E-13255345IPR003340B3 DNA binding domain
SMARTSM010191.1E-11256347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTSSGEQIRQ DDCGERLIGT RFFKIILDET IRHKKLLIPG KFIQKYGQGL VNFAILKVPS  60
GVKWVVSVVR DEIGVWLSDG WHEFVESHSL EHGHFLVFEY EEGSSSFSVV ICDKTATEIA  120
YPKKQQQPDE GGDKLFPLLK LQQCEEEEEA FDHRDDDDLA PVNKDKSPME VSPPLKKMRG  180
SVTHVNATRV QMRNCNFQIP QSPLQSSAGQ GLVDNVMKLA LKDDKKEGGA DDKRMMYDDK  240
KPHAPMPEFS SQHPFFFIEI TSKMLTRKDL YVPVSFSTNH IGKDDKSVKL QVCDKTWSVA  300
LMRYSKYVYF TDDWNLFINE NSLKPGDVCI FESVQRMLLN VTIFRGCVLP AAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100167770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-18B3 family protein