PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 32038.2 Da PI: 9.6278 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 148 | 198 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+t eeAa a++ a+ l+ge Lus10016669 148 VFRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTGEEAAMAYDTAAYMLRGE 198 69******9.**********955...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.4E-35 | 148 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 148 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 148 | 206 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 148 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.405 | 148 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 149 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.85E-31 | 149 | 207 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 171 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MENFMFKDLQ LSCHHLRGGR EGTSNHSFLP DPTIWTSSIT QPHNWAPAAA AAGDHQIQSS 60 APMNNPVNFL ESFPNLMKAM KPISLDSPPS AANNFSNLTL FSRPLFSPVE KIDQSPSFLP 120 SKRWLSANKT QQMKYKAGGR SVSSAGKVFR GVRQRHWGKW VAEIRLPRNR TRVWLGTFDT 180 GEEAAMAYDT AAYMLRGEYA HLNFPELKHQ LKANGTTAAL LEAKLEAMKK KKELTEQQNP 240 AEKEEPVVNS DNNNSNSNNV AGVQLSRMPS LDMDMIWDAL LVHDSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 138 | 205 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016669 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ884126 | 4e-36 | HQ884126.1 Linum usitatissimum clone Contig1409 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644211.1 | 1e-68 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
Swissprot | Q9SVQ0 | 2e-54 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A2U1L4A2 | 1e-69 | A0A2U1L4A2_ARTAN; DNA-binding domain-containing protein | ||||
STRING | Lus10016669 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10016669 |