PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016286
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 302aa    MW: 33939.5 Da    PI: 9.7698
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016286genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-182731996
                 -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 pkkf ++ +gk   +kt+t++ +sg  W+v l  +++++++++++GWkeF+ +n L++ D +vFk++g+s f   v +
  Lus10016286  2 PKKFSNRLKGK--LPKTVTVTGPSGANWSVGL--TNTDETTFFSRGWKEFATDNCLQVDDLLVFKYNGDSHF--DVLI 73
                 99998777777..899****************..**********************************9999..5555 PP
2B342.98.6e-14200280184
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  f++v+++s+v +   l++p   +++h +k  e+++++l+  + ++W vk++ +k sg+  +++GW+ Fv++n+L+  D+++F+ 
  Lus10016286 200 FISVMKTSSVCTAYYLTVPSWWMKKHVKKYWETQEVILKV-EENEWPVKFRLKKDSGG--FGGGWRMFVQDNQLQMFDVCLFQP 280
                  8899**********************77777888898776.779******99999988..8*********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.975177IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-19176IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-16174No hitNo description
SMARTSM010192.2E-4277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18275IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-14271IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-16196300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-13199284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-14199300No hitNo description
SMARTSM010192.6E-4200289IPR003340B3 DNA binding domain
PfamPF023622.5E-12200281IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842200301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPKKFSNRLK GKLPKTVTVT GPSGANWSVG LTNTDETTFF SRGWKEFATD NCLQVDDLLV  60
FKYNGDSHFD VLILESPTSC EKATAYFAKK KNNGRGGGKQ SSVIRRERET INEISGEGES  120
PASPRIPTTE NDVDSPGSSS TDWQRVSSGE CNKRPAKVKL DKVGKSRRRR VGEVNRTPVT  180
EESKRKALRL ASDAGNQDSF ISVMKTSSVC TAYYLTVPSW WMKKHVKKYW ETQEVILKVE  240
ENEWPVKFRL KKDSGGFGGG WRMFVQDNQL QMFDVCLFQP CSSSMPPYND TLVLDVKIFR  300
C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100162860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-49B3 family protein