PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016285
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 467aa    MW: 52686.7 Da    PI: 10.026
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016285genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.2e-1947130997
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++  ++rlv+p +fa+++  k   + t+ l+ +sg+sW+v +  + ++++ ++++GWkeF++++ L   D ++F+++g+  f   v vf
  Lus10016285  47 HSDFNSRLVIPARFAKKMRTK--LPATVNLKGPSGNSWSVGVE-SSNDETLFFSSGWKEFAQDHCLHPTDLLIFRYNGDALF--DVLVF 130
                  5556678********999755..889****************3.5555669*************************997666..66665 PP
2B353.54.3e-17360442185
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  f++v+++ +v +   +++p   +++h +g   e+++++l+   gr+W+v+++ r k+++  lt GW+ F+++n+Lk+ D+++F+ +
  Lus10016285 360 FITVMKTTHVKTCFYMTIPMAWLKKHmDGR--EKQEVILRV-GGREWRVRYKLREKRDSGGLTHGWRTFAEDNNLKQFDVCLFQPS 442
                  8999**********************6444..334677665.9**********99999999**********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.87539133IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-2239131IPR015300DNA-binding pseudobarrel domain
CDDcd100174.21E-1942131No hitNo description
SMARTSM010193.4E-1442133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2242132IPR015300DNA-binding pseudobarrel domain
PfamPF023629.9E-1647124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-20356464IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-15360442IPR003340B3 DNA binding domain
SMARTSM010198.2E-9360451IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182360454IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-17360445IPR015300DNA-binding pseudobarrel domain
CDDcd100179.75E-22360465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MQLPNFIPGR KLISKKPAME SGSRPSSWEE EIYWNNFQYT HFSTFLHSDF NSRLVIPARF  60
AKKMRTKLPA TVNLKGPSGN SWSVGVESSN DETLFFSSGW KEFAQDHCLH PTDLLIFRYN  120
GDALFDVLVF DLESSCEKAS SYFARKQETR KKMRGYTPAA TTSSAGFISP SPEQQHQTGD  180
TTKQSTCQPV ISELPNKRAR TGWTKATASR DWKSAAEKSR RRALKLASYF TARKQGTGNK  240
IKRVRSEMED PVNHSGWKPA AEESNQKVLK SASYFCVQNH QEMGGSSTAT ISGEDGNSIR  300
TKTPPLPTCP PIICELSNKR AREELTKPAG VMNNDWKTVS EESKLKAIRA ARFALKEDGF  360
ITVMKTTHVK TCFYMTIPMA WLKKHMDGRE KQEVILRVGG REWRVRYKLR EKRDSGGLTH  420
GWRTFAEDNN LKQFDVCLFQ PSNSSYNVPG ADAAADIVLD VEIFRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100162850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-38B3 family protein