PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016092
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 253aa    MW: 28183.8 Da    PI: 9.5106
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016092genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.4e-19181214134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+Cg+t+Tp+WR+gp g+ktLCnaCG+++r+ +
  Lus10016092 181 CSHCGVTHTPQWREGPMGPKTLCNACGVRHRSGR 214
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.5E-16175225IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-15179238No hitNo description
PROSITE profilePS5011411.741180211IPR000679Zinc finger, GATA-type
CDDcd002022.87E-15180227No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14180212IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16181214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MADSWFYDLA NFSGFPDDFS LENIDLSLES LEDVDPAVDW DTKFKDLEPP SVFLPNFPPD  60
IPSANDIKPV KVEGTSVLKN ESPELKKSFR TSSPVSVLDN NSSSSCSAEI PTRRPRSKGV  120
RSQRRTYEFF HRLFAGERRL HPVAPLNSET ESNKKKNLTA VSRNISEAAK KKKQPVINSK  180
CSHCGVTHTP QWREGPMGPK TLCNACGVRH RSGRLFPEYR PAGSPTFVPE LHSNSHRKVL  240
EMRMKASSSN GP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153172KKKNLTAVSRNISEAAKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040892.11e-59PREDICTED: GATA transcription factor 11-like isoform X2
TrEMBLA0A2P2LDR03e-60A0A2P2LDR0_RHIMU; Uncharacterized protein
STRINGLus100160920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-42GATA transcription factor 11