PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015944
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 397aa    MW: 44386.6 Da    PI: 4.7041
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015944genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.21.6e-35117211297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  lfqrlw++eDei lLqG+ +++a++g   + d+  fy+++k++++++++ksqlveK+rrLKkK+++  +k++sgk++sf+++hdq +fe+s+kiW 
  Lus10015944 117 LFQRLWTDEDEIELLQGFFEYTAHRG-GIHYDTAMFYDQIKSKLQLDFNKSQLVEKLRRLKKKYRNVLAKIDSGKDFSFKSPHDQITFEISRKIWS 211
                  79************************.8899****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-33118211IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSSAVQDNVV FDHDLDDGDS QSQDDDYDDL ENDDVLAVEE DDEDLNFISP PTLVTPAPPV  60
AVPSASLVTV AADPHKFAAE MSSSAVLPEA KRQRTEAMMI VPLDERKPQP LDKSRQLFQR  120
LWTDEDEIEL LQGFFEYTAH RGGIHYDTAM FYDQIKSKLQ LDFNKSQLVE KLRRLKKKYR  180
NVLAKIDSGK DFSFKSPHDQ ITFEISRKIW SSTGKLAGVE DGNLEEEEEG NPNLNYNNMN  240
SFSSNNGGEI NQKSTPTPRK RSRSRSLATP LILGRCGVSD GGGKMDDKNQ GVASNNNGIS  300
NNSHHHGNVN VGGLIEETVK RCLSPLFKEL LKNNAMVGGV GREIGGLAMP LNFEGVEMMG  360
DEKWRKQQIM ELEVYLKRLE LVQDQIRSQL EELRSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264KRSRSR
2317321TVKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021669355.11e-125probable transcription factor At3g04930
TrEMBLA0A2P2IJ981e-122A0A2P2IJ98_RHIMU; Uncharacterized protein
STRINGLus100159440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.27e-51DNA-binding storekeeper protein-related transcriptional regulator