PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015909
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 350aa    MW: 36520.8 Da    PI: 6.8029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015909genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09197241554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Lus10015909 197 HSIAERLRRERIAERMKALQELVPTvN------KTDRAAMLDEIVDYVKFL 241
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-11190246No hitNo description
SuperFamilySSF474592.62E-15190252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.361192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-15194254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-7197241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAGNPTPDGL GDDFFEQILA AQPGYGGGGG GGGGGEGMMM MGLQLGSGGG SGGMRGGNSN  60
NNNNNNNMGG MMPLGLNLEH HGFIRHPPED QSGGGGVGGL GSGNLNNNNA PSSSATSGIS  120
ERDSVHMTGL FPAFGQLQSQ SIRAPPPQLH HHHHHHNPHQ QFQSQPTPGP GQVPAGLQPP  180
SIRPRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP TVNKTDRAAM LDEIVDYVKF  240
LRLQVKVLSM SRLGAAGAVA QLVADVPASS VEGGGGGGEE QAWEKWSNDG TEQQVAKLME  300
EDVGGAMQFL QSKALCIMPI SLASAIFRSH PPPPDPSSTL VKPESNPHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015909
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650937.11e-148transcription factor UNE12-like
SwissprotO227682e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2C9VFZ71e-145A0A2C9VFZ7_MANES; Uncharacterized protein
STRINGLus100159090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]