PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015740
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 371aa    MW: 40614.2 Da    PI: 6.3629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015740genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024275297123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F++   L  H r+H
  Lus10015740 275 HECPICFKVFTTGQALGGHKRSH 297
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.48E-51743No hitNo description
PROSITE profilePS501579.4111845IPR007087Zinc finger, C2H2
PfamPF139127.8E-71841IPR007087Zinc finger, C2H2
SMARTSM003550.0471840IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097191218IPR007087Zinc finger, C2H2
PfamPF139126.7E-10191215IPR007087Zinc finger, C2H2
SuperFamilySSF576672.53E-8191213No hitNo description
SMARTSM003550.13191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SuperFamilySSF576672.53E-8270297No hitNo description
PfamPF139123.2E-11274297IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328275297IPR007087Zinc finger, C2H2
SMARTSM003550.1275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEEDHHDHEE EVVMRWKHVC KFCRKRFQSG RSLGGHMRSH MVDDVSALTD GTLITRKKLP  60
SLPHLTEAAK SASLSVGSKN NINNGGGGGG GSCSGTSGNE DQQEQEEVAM CLMLLSRDIV  120
HVTDESYSGK STSDCLELTV SENTRKGGDG SCSDGLSQET ESETSDSKRK RKLGDDDDAV  180
LNSVNNSSIK FECEACNKKF HSYQALGGHK ASHKKIKGCS FNSNEEEETH DGSKLIMMKS  240
MKHEILSNNN NIKSITTTVA ATEKKKKKSS SERVHECPIC FKVFTTGQAL GGHKRSHLLV  300
GTSASVSAEE EEIPDIKNFM VDLNLPAQVD EDSIIISNSN INRNLNDAVF ENPWWTGSKH  360
EQQLVVTINL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100157400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-25C2H2-like zinc finger protein