PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 543aa MW: 61215.1 Da PI: 4.5846 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.3e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp GfrF+Ptdeelv++yL+ k+++++ ++ +vi+e+d++k+ePwdLp + vk+++ ew+fF++ d+ky++g+r nrat +gyWkatgkd++++s + Lus10015587 9 LPLGFRFRPTDEELVDFYLRLKINNQHEDV-RVIREIDVCKWEPWDLPdlSIVKTKDPEWFFFCPLDRKYPNGSRLNRATVKGYWKATGKDRRIKS-G 104 699************************999.99**************96447778889**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+g+kktLvfy+grapkg++t+Wvmheyr Lus10015587 105 QNLIGMKKTLVFYTGRAPKGQRTHWVMHEYRT 136 99****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-60 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.552 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MAVLPLNSLP LGFRFRPTDE ELVDFYLRLK INNQHEDVRV IREIDVCKWE PWDLPDLSIV 60 KTKDPEWFFF CPLDRKYPNG SRLNRATVKG YWKATGKDRR IKSGQNLIGM KKTLVFYTGR 120 APKGQRTHWV MHEYRTTEDD LNGTKPGQSP FVLCRLFKKQ DPTVEDLNSD EVAEATVLSH 180 TTATTTAHSS PDVTQSQTHS DLPLPADSPL DTTSVPAVVE SFQSPSRVQN PTMLNVAPVE 240 REMQLKEPFN WFDVPPPESL DDKIFSPLHT QVQAELGSSC GYYPINSNPA NKFTDENEAD 300 LSEFLDSILD YSYDDQSRPG AEIGQNMVGS IDPVEDRKPT MQVEETPGVA DTNLLLDSKM 360 IENFKYFQAA PCDDGQWSRL GHLTGDQFNN LGEASSDINQ VASVSSNEIE ASGNIKIRSR 420 DPQKQYSVNF GAQGDAHRRL QLQTKLCAPS CDTNEKSSDG SFLSEEVESR KDHMEVRRCG 480 WETNEGIQGL GKEERYCCSV EEVPVHRDEG FLNVWTSEVW FYVEGSVADG VFCNSSERME 540 MH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 8 | 160 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 8 | 160 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 8 | 160 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 8 | 160 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-44 | 8 | 160 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 8 | 160 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015587 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021627360.1 | 1e-137 | NAC domain-containing protein 91-like isoform X2 | ||||
Swissprot | Q9SCK6 | 9e-98 | NAC62_ARATH; NAC domain-containing protein 62 | ||||
TrEMBL | A0A2C9WK47 | 1e-136 | A0A2C9WK47_MANES; Uncharacterized protein | ||||
STRING | Lus10015587 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 6e-99 | TCV-interacting protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10015587 |
Publications ? help Back to Top | |||
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