PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015554
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 119aa    MW: 13510.3 Da    PI: 7.508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.11.5e-18657150
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..k 50
                 lppGfrFhP deelv +yLk k++g+k+el e+i+ev++yk+ePwd p +  +
  Lus10015554  6 LPPGFRFHPADEELVAYYLKSKINGQKIEL-EIIPEVELYKCEPWDWPgNagR 57
                 79****************************.99*************9933331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-18457IPR003441NAC domain
PROSITE profilePS5100517.3646118IPR003441NAC domain
PfamPF023659.8E-9749IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPADEELV AYYLKSKING QKIELEIIPE VELYKCEPWD WPGNAGRLSE  60
TKKAERNRPA NNLTEVSGVG NEARSFLEAE KSHQRPFSLY NVKTTNFYGL REVKKLTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-142551164Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015554
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100155542e-82(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114331739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-29NAC domain containing protein 86