PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015536
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-PHD
Protein Properties Length: 714aa    MW: 80401.4 Da    PI: 9.7966
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015536genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.57.4e-11500546753
                  --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  + ++ +e L ++Fe n  ps++ +++L++++gL+  +V+ WF+N R+
  Lus10015536 500 IPPSAVEKLRQAFEGNELPSRKVKQKLSEEMGLEPGKVSKWFKNARY 546
                  5678899**************************************97 PP
2PHD35.32.7e-12234288150
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                  +C+ C++     +++++lCd +C+ ++H+ Cl+++l +e++p g   w+C+ C++
  Lus10015536 234 FCAKCKSndVVRDNDIILCDgTCNCAYHQMCLEPPLHTENIPPGdqGWFCKFCER 288
                  699****65556********56********************9999*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.02E-13226291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.5E-12230289IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.371232289IPR019787Zinc finger, PHD-finger
SMARTSM002494.9E-7234287IPR001965Zinc finger, PHD-type
PfamPF006281.4E-9234288IPR019787Zinc finger, PHD-finger
CDDcd155041.33E-28234286No hitNo description
PROSITE patternPS013590235286IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.357491551IPR001356Homeobox domain
SMARTSM003891.5E-8493555IPR001356Homeobox domain
CDDcd000863.46E-8494553No hitNo description
SuperFamilySSF466894.28E-9494558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-11494545IPR009057Homeodomain-like
PfamPF000462.3E-8499546IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MHSMVKTVVD QASKKATLSK AEFSSLLIAS LKSRHGSKKQ RSLSSPSVKA IRSVISKKKK  60
VGRPSSKLSR KGARSRKLIR GKSTNKQVHQ SSSKKSDLSD PRCQPAPATC SEINDKSASK  120
GKKRKFKRRT LTEKRKHKEE LDEPSKLQRR TRYLMIRMKM EQNLIDAYSG EGWKGHSREK  180
IRPEKELIRA KKQILKCKLG IRDAVHQLDL LSNVGCIEES VIAADGSVSH EHIFCAKCKS  240
NDVVRDNDII LCDGTCNCAY HQMCLEPPLH TENIPPGDQG WFCKFCERRM EIIDSMNAHL  300
GTRFSMTCNW KVDIFTEEAD TPDGGNILTL EEEWPSDDSE DDDYDPERRE KSMSGAGTDN  360
HVSDSASSST SLGWSSHDEA LPESKRLQLE GMVVRSHSIN SSLNSEEASD VEIVHGRRRR  420
RAVDYRKLYD EMFGKDAPVA DQLSEDEDWG PSKRTRRAKE SDAASTLMNL YQNEKIGEEI  480
EEGKKEVPQD SLVRRALSRI PPSAVEKLRQ AFEGNELPSR KVKQKLSEEM GLEPGKVSKW  540
FKNARYMALK SRKVNKTTGS SDSTPMLSEA ADDVKKGGGE GPEVVNDIGT EPRLRTRRTS  600
KHVSTMTKLK SKYGVKENDP AKSQMEAEKL DDDVSLKMLL KDESKREKSD SSESAHQLAE  660
TEMERLCRAK DTIDKMKQIL GSLPFLKRRK SKPPLGLLER VVYVPIAQLK EKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KRKFKRRTLTEKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015536
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592703.10.0pathogenesis-related homeodomain protein
RefseqXP_021592704.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-143PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2C9UM350.0A0A2C9UM35_MANES; Uncharacterized protein
STRINGLus100155360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-138pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]