PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015428
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 297aa    MW: 34242.7 Da    PI: 8.608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16126211283
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  +kvl +sdv+++gr+vlpkk +ee+   + ++e++ ++++d  s ++W+vk+++  ++ks++yvl+ +  eFv++ngL++gD + + 
  Lus10015428 126 KKVLRKSDVGALGRIVLPKKETEENlpYLHEKEGIHIVIRDvYSTQEWTVKFKFwiNNKSRMYVLE-NAGEFVRENGLESGDCLNLF 211
                  6999***********************556668899*****7788*******9989999999**99.9**************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-22119225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19124221IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.63125226IPR003340B3 DNA binding domain
SMARTSM010193.6E-15125225IPR003340B3 DNA binding domain
PfamPF023621.3E-12127215IPR003340B3 DNA binding domain
CDDcd100171.07E-16131222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESNHQPSIP PPPPPTHHDS EALTQFYPSV PIQAALPSPH LEGANWSQEQ ENKKVVDALK  60
TKLARTKRKL ARQRSLLNKS IASASSVGSN RNPVEQRIRS VVRTERSRLL FDFFTPDNKR  120
LRLLLKKVLR KSDVGALGRI VLPKKETEEN LPYLHEKEGI HIVIRDVYST QEWTVKFKFW  180
INNKSRMYVL ENAGEFVREN GLESGDCLNL FEDESGKFYY IFQKVIRPQE TQPTNQFYYQ  240
TNEAREEEDA SLAVLIEQLK HREHMEEEET RNLLNITSCP PTNYAQTYGL STNSHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A5e-431152203108B3 domain-containing transcription factor LEC2
6j9c_D5e-431152203108B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092409.11e-74B3 domain-containing transcription factor LEC2
TrEMBLA0A1Q3BTE98e-76A0A1Q3BTE9_CEPFO; B3 domain-containing protein
STRINGLus100154280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.17e-39B3 family protein