PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 26518.5 Da PI: 5.6661 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.3 | 9.8e-13 | 34 | 172 | 7 | 127 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykveP..wdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 F+Pt+ l e L++k ++k+++l +d y+++P w+L + +++++++ ++y Fs+++ k a g r t sg+W tg++ +v++ k Lus10015312 34 FKPTETYLA-ELLERKFASKDTSL------FDFYSYDPedWNL-ApaqeNIHHHDDgNTYVFSPSKAKFA-GGVIIRDTPSGFWMRTGRSATVIEDgK 122 899999998.99999999999777......6899999933455.233454444444488*****999876.7789999**************999878 PP NAM 97 gelvglkktLvfy...................kgrapkgektdWvmheyr 127 ge+ g+k +L f+ + + ++ ++t W mhe Lus10015312 123 GEQLGCKGVLNFFikkpdgydeqvsggrrvpkRRQLRTEVQTLWQMHEIC 172 999**********8888777777766665553334455568999999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.213 | 23 | 191 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-13 | 33 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-6 | 34 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDQQSSAVKQ GDHHDQSPGS PPINLLKDSL PSGFKPTETY LAELLERKFA SKDTSLFDFY 60 SYDPEDWNLA PAQENIHHHD DGNTYVFSPS KAKFAGGVII RDTPSGFWMR TGRSATVIED 120 GKGEQLGCKG VLNFFIKKPD GYDEQVSGGR RVPKRRQLRT EVQTLWQMHE ICLIPKDNVN 180 PGMALCVAYK TKPVIKKPKK KKKVKTGEDD ASSTGSWTDS DWDTDTDTDT SDSEDET* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 156 | RRVPKRRQ |
2 | 150 | 155 | RVPKRR |
3 | 197 | 203 | PKKKKKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015312 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10015312 | 1e-177 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 2e-07 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Lus10015312 |