PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10015271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 200aa MW: 22117.1 Da PI: 9.8502 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.5 | 7e-18 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rien+ r++tfskRr+gi KKA+ + LC+aev v+ fs++g+ ++y Lus10015271 20 RIENSDARSITFSKRRAGIYKKASDIVSLCGAEVGVLFFSPSGRPFTY 67 9******************************************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-23 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.226 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-22 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-16 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-21 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-16 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-16 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAEPENTKKT RGRRKIPMQR IENSDARSIT FSKRRAGIYK KASDIVSLCG AEVGVLFFSP 60 SGRPFTYGFP SIESVAGRFL RPVPETTDVQ GMVTDLAARR FNRMRNRLTI DELNLQVIEL 120 EAGSEAMKKR AEAVSTERRK KEEQAADWWD FPVEDLSLEQ MRIAESEMMN FSRYLERGSG 180 SGAAGRGLAG GNCSGAGVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10015271 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10015271 | 1e-144 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-32 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Lus10015271 |